GitHub organization
Agent skills by FreedomIntelligence
- skills
- 173
- repository
- 1
Repositories by FreedomIntelligence
Skills by FreedomIntelligence, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Select and apply numerical differentiation schemes for PDE/ODE discretization. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Notes | No licence | 2 mo ago |
| 2 | Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 3 | Plan and evaluate mesh generation for numerical simulations. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.1k | Automated safety check: Notes | No licence | 2 mo ago |
| 4 | Select and configure time integration methods for ODE/PDE simulations. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Notes | No licence | 2 mo ago |
| 5 | Parse, navigate, and query materials science ontology structure (classes, properties, hierarchy). | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Notes | No licence | 2 mo ago |
| 6 | Map materials science terms, crystal structures, and sample descriptions to ontology classes and properties. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Notes | No licence | 2 mo ago |
| 7 | Validate material sample annotations and data structures against ontology constraints. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Notes | No licence | 2 mo ago |
| 8 | Identify computational bottlenecks, analyze scaling behavior, estimate memory requirements, and receive optimization recommendations for any computational simulation. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Notes | No licence | 2 mo ago |
| 9 | Extract, analyze, and visualize simulation output data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Notes | No licence | 2 mo ago |
| 10 | Orchestrate multi-simulation campaigns including parameter sweeps, batch jobs, and result aggregation. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Notes | No licence | 2 mo ago |
| 11 | Validate simulations before, during, and after execution. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Notes | No licence | 2 mo ago |
| 12 | Generate SLURM sbatch job scripts and sanity-check HPC resource requests (nodes, tasks, CPUs, memory, GPUs) for simulation runs. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Notes | No licence | 2 mo ago |
| 13 | Plan and control time-step policies for simulations. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.1k | Automated safety check: Notes | No licence | 2 mo ago |
| 14 | Run bioinformatics analyses using Lobster AI - single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization. | FreedomIntelligence/ | 3.1k | 2 repos | ~2.5k | Automated safety check: Notes | No licence | 2 mo ago |
| 15 | Analyze protein-protein interaction networks using STRING, BioGRID, and SASBDB databases. | FreedomIntelligence/ | 3.1k | 2 repos | ~3.7k | Automated safety check: Notes | No licence | 2 mo ago |
| 16 | Automate payer review of prior authorization (PA) requests. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~3.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 17 | Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 18 | Process multiple sequence files in batch using Biopython. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 19 | Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 20 | Read and write compressed sequence files (gzip, bzip2, BGZF) using Biopython. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 21 | Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 22 | Detects somatic mutations in circulating tumor DNA using variant callers optimized for low allele fractions with UMI-based error suppression. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 23 | Perform differential expression analysis using DESeq2 in R/Bioconductor. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 24 | Visualize differential expression results using DESeq2/edgeR built-in functions. | FreedomIntelligence/ | 3.1k | 1 repo | ~3k | Automated safety check: Pass | No licence | 2 mo ago |
| 25 | Detect and track antimicrobial resistance genes using AMRFinderPlus and ResFinder with epidemiological context. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 26 | Construct time-scaled phylogenies and infer evolutionary dynamics using TreeTime and BEAST2 for outbreak analysis. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 27 | Infer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 28 | Assign pathogen lineages and track variants using Nextclade and pangolin for viral surveillance. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 29 | Filter and select sequences by criteria (length, ID, GC content, patterns) using Biopython. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 30 | Bead-based normalization for CyTOF and high-parameter flow cytometry. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 31 | Unsupervised clustering and cell type identification for flow/mass cytometry. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 32 | Spillover compensation and data transformation for flow cytometry. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 33 | Detect and remove doublets from flow and mass cytometry data. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 34 | Read and manipulate Flow Cytometry Standard (FCS) files. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 35 | Convert between sequence file formats (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 36 | Analyzes cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 37 | Design guides for cytosine and adenine base editing using editing window optimization and BE-Hive outcome prediction. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 38 | Design guide RNAs for CRISPR-Cas9/Cas12a experiments using CRISPRscan and local scoring algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 39 | Design homology-directed repair donor templates for CRISPR knock-ins using primer3-py. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 40 | Predict CRISPR off-target sites using Cas-OFFinder and CFD scoring algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 41 | Design pegRNAs for prime editing using PrimeDesign algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 42 | Process Hi-C read pairs using pairtools. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 43 | Load, convert, and manipulate Hi-C contact matrices using cooler format. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 44 | Compare Hi-C contact matrices between conditions to identify differential chromatin interactions. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 45 | Visualize Hi-C contact matrices, TADs, loops, and genomic features using matplotlib, cooltools, and HiCExplorer. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 46 | Detect chromatin loops and point interactions from Hi-C data using cooltools, chromosight, and HiCCUPS-like methods. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 47 | Balance, normalize, and transform Hi-C contact matrices using cooler and cooltools. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 48 | Call topologically associating domains (TADs) from Hi-C data using insulation score, HiCExplorer, and other methods. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
Questions, answered from the data.
What is the best skill by FreedomIntelligence?
Differentiation Schemes from FreedomIntelligence/OpenClaw-Medical-Skills ranks first of the 173 skills by FreedomIntelligence listed here, with the highest score: its repository has 3.1k GitHub stars, 1 other GitHub owner carry a copy, its SKILL.md loads about 1.4k tokens and it has informational notes only in the automated safety check. Next come Medical Research Toolkit and Mesh Generation.
Are FreedomIntelligence's skills official?
None yet. All 173 skills by FreedomIntelligence listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.