Bio Flow Cytometry Clustering Phenotyping
GPTomics/bioSkills
Unsupervised clustering and cell-type identification for high-dimensional flow, spectral, and mass cytometry - FlowSOM, PhenoGraph, FlowSOM-via-CATALYST, with UMAP/tSNE for visualization.
Agent skill
Bio Flow Cytometry Clustering Phenotyping
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Unsupervised clustering and cell type identification for flow/mass cytometry.
No licenceAuto-check passed
Install Bio Flow Cytometry Clustering Phenotyping
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-clustering-phenotyping -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-clustering-phenotyping --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-flow-cytometry-clustering-phenotyping .claude/skills/bio-flow-cytometry-clustering-phenotyping && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-flow-cytometry-clustering-phenotyping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-clustering-phenotyping into .claude/skills/bio-flow-cytometry-clustering-phenotyping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-clustering-phenotyping", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-clustering-phenotypingType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-clustering-phenotyping -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-clustering-phenotyping --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-flow-cytometry-clustering-phenotyping .agents/skills/bio-flow-cytometry-clustering-phenotyping && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-flow-cytometry-clustering-phenotyping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-clustering-phenotyping into .agents/skills/bio-flow-cytometry-clustering-phenotyping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-clustering-phenotyping", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-clustering-phenotyping -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-clustering-phenotyping --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-flow-cytometry-clustering-phenotyping .cursor/skills/bio-flow-cytometry-clustering-phenotyping && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-flow-cytometry-clustering-phenotyping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-clustering-phenotyping into .cursor/skills/bio-flow-cytometry-clustering-phenotyping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-clustering-phenotyping", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-flow-cytometry-clustering-phenotyping--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-clustering-phenotyping -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-clustering-phenotyping --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-flow-cytometry-clustering-phenotyping .gemini/skills/bio-flow-cytometry-clustering-phenotyping && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-flow-cytometry-clustering-phenotyping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-clustering-phenotyping into .gemini/skills/bio-flow-cytometry-clustering-phenotyping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-clustering-phenotyping", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-clustering-phenotypingInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-clustering-phenotyping -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-flow-cytometry-clustering-phenotyping .github/skills/bio-flow-cytometry-clustering-phenotyping && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-flow-cytometry-clustering-phenotyping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-clustering-phenotyping into .github/skills/bio-flow-cytometry-clustering-phenotyping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-clustering-phenotyping", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-clustering-phenotyping -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-clustering-phenotyping --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-flow-cytometry-clustering-phenotyping .opencode/skills/bio-flow-cytometry-clustering-phenotyping && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-flow-cytometry-clustering-phenotyping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-clustering-phenotyping into .opencode/skills/bio-flow-cytometry-clustering-phenotyping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-clustering-phenotyping", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-flow-cytometry-clustering-phenotyping- GitHub stars
- 3.1k
- Used in
- 1 other repo
- Token cost
- ~1.8k tokens
- SKILL.md length
- 439 words
- Files
- 3
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Unsupervised clustering and cell type identification for flow/mass cytometry.
- Discovering cell populations in high-dimensional cytometry data without predefined gates
- SKILL.md covers Version Compatibility, FlowSOM Clustering, CATALYST Workflow (Full… and Phenograph Clustering, plus 9 more sections
- Runs R scripts from its folder
What it does
Bio Flow Cytometry Clustering Phenotyping is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Unsupervised clustering and cell type identification for flow/mass cytometry. Covers FlowSOM, Phenograph, and CATALYST workflows. Use when discovering cell populations in high-dimensional cytometry data without predefined gates.
Its SKILL.md is about 1.8k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `usage-guide.md`).
The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Discovering cell populations in high-dimensional cytometry data without predefined gates
Example prompts
- “/bio-flow-cytometry-clustering-phenotyping”
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (R), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Flow Cytometry Clustering Phenotyping loads about 1.8k tokens when it runs. Until then it costs about 68 tokens; SKILL.md has 439 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 439 words (~1,759 tokens).
“Reference examples tested with: FlowSOM 2.10+, scanpy 1.10+”
- name
- bio-flow-cytometry-clustering-phenotyping
- tool_type
- r
- primary_tool
- CATALYST
Files
SKILL.md and 2 other files in skills/bio-flow-cytometry-clustering-phenotyping of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/cluster_cytof.R
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Bio Flow Cytometry Clustering Phenotyping next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Flow Cytometry Clustering Phenotyping this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~1.8k | Automated safety check: Pass | None | |
| Bio Flow Cytometry Clustering PhenotypingGPTomics/bioSkills | 1.2k | 1 repos | ~2.3k | Automated safety check: Pass | MIT | |
| Bio Imaging Mass Cytometry PhenotypingGPTomics/bioSkills | 1.2k | 1 repos | ~3.5k | Automated safety check: Pass | MIT | |
| Bio Imaging Mass Cytometry Data PreprocessingGPTomics/bioSkills | 1.2k | 1 repos | ~4.2k | Automated safety check: Pass | MIT | |
| Bio Flow Cytometry Cytometry QcGPTomics/bioSkills | 1.2k | 1 repos | ~2.5k | Automated safety check: Pass | MIT | |
| Bio Imaging Mass Cytometry Cell SegmentationGPTomics/bioSkills | 1.2k | 1 repos | ~3.5k | Automated safety check: Pass | MIT |
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Bio Imaging Mass Cytometry Cell Segmentation
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Bio Imaging Mass Cytometry Differential Analysis
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Compare cell-type composition and spatial features across conditions in IMC/MIBI cohorts with the patient as the experimental unit, covering pseudoreplication, per-patient aggregation, mixed models…
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Questions about Bio Flow Cytometry Clustering Phenotyping
What does Bio Flow Cytometry Clustering Phenotyping do?
Unsupervised clustering and cell type identification for flow/mass cytometry. Bio Flow Cytometry Clustering Phenotyping is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Unsupervised clustering and cell type identification for flow/mass cytometry.
When should I use Bio Flow Cytometry Clustering Phenotyping?
Bio Flow Cytometry Clustering Phenotyping fits situations like: discovering cell populations in high-dimensional cytometry data without predefined gates.
How do I install Bio Flow Cytometry Clustering Phenotyping in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-clustering-phenotyping -a claude-code`. Or copy the skill folder (skills/bio-flow-cytometry-clustering-phenotyping in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-flow-cytometry-clustering-phenotyping in your project. Claude Code loads it when a task matches its description.
How do I install Bio Flow Cytometry Clustering Phenotyping in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-clustering-phenotyping -a codex`. Or copy the skill folder (skills/bio-flow-cytometry-clustering-phenotyping in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-flow-cytometry-clustering-phenotyping in your project. Codex loads it when a task matches its description.
Can I use Bio Flow Cytometry Clustering Phenotyping in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-clustering-phenotyping -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-flow-cytometry-clustering-phenotyping, .gemini/skills/bio-flow-cytometry-clustering-phenotyping, .github/skills/bio-flow-cytometry-clustering-phenotyping and .opencode/skills/bio-flow-cytometry-clustering-phenotyping in your project.
What does Bio Flow Cytometry Clustering Phenotyping need to run?
Going by SKILL.md and its folder, Bio Flow Cytometry Clustering Phenotyping needs R for the scripts in its folder.
Does Bio Flow Cytometry Clustering Phenotyping access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Bio Flow Cytometry Clustering Phenotyping safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Flow Cytometry Clustering Phenotyping use?
No licence was found for Bio Flow Cytometry Clustering Phenotyping or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Flow Cytometry Clustering Phenotyping use?
About 1.8k tokens (SKILL.md is roughly 7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Flow Cytometry Clustering Phenotyping?
Skills that share tags, products or a category with Bio Flow Cytometry Clustering Phenotyping: Bio Flow Cytometry Clustering Phenotyping (GPTomics/bioSkills, 1.2k stars), Bio Imaging Mass Cytometry Phenotyping (GPTomics/bioSkills, 1.2k stars), Bio Imaging Mass Cytometry Data Preprocessing (GPTomics/bioSkills, 1.2k stars) and Bio Flow Cytometry Cytometry Qc (GPTomics/bioSkills, 1.2k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Flow Cytometry Clustering Phenotyping?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.