Agent skill

Bio Hi C Analysis Hic Data Io

by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills

Load, convert, and manipulate Hi-C contact matrices using cooler format.

No licenceAuto-check passedBackend & APIs

Install Bio Hi C Analysis Hic Data Io

skills CLI
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-hi-c-analysis-hic-data-io -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-hi-c-analysis-hic-data-io --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-hi-c-analysis-hic-data-io .claude/skills/bio-hi-c-analysis-hic-data-io && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
bio-hi-c-analysis-hic-data-io
GitHub stars
3.1k
Used in
1 other repo
Token cost
~1.7k tokens
SKILL.md length
225 words
Files
3
Skills in repo
279
Repo updated
First seen
Licence
None found

At a glance

Load, convert, and manipulate Hi-C contact matrices using cooler format.

  • Converting Hi-C contact matrices
  • SKILL.md covers Version Compatibility, Required Imports, Load a Cooler File and Load Multi-Resolution Cooler…, plus 14 more sections
  • Runs Python scripts from its folder; calls pip
  • Tasks that involve Authorization and RBAC

What it does

Bio Hi C Analysis Hic Data Io is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Load, convert, and manipulate Hi-C contact matrices using cooler format. Read .cool/.mcool files, convert from .hic format, access matrix data, and export to different formats. Use when loading or converting Hi-C contact matrices.

Its SKILL.md is about 1.7k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/load_cooler.py` and `usage-guide.md`).

It sits in Backend & APIs, covering Authorization and RBAC. It works with Python. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.

When your agent uses it

  • Converting Hi-C contact matrices
  • Tasks that involve Authorization and RBAC

Example prompts

  • “/bio-hi-c-analysis-hic-data-io”

Requirements

  • Python 3

What it can do on your machine

Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships script files (Python), which the agent can run.

    Shell commands in SKILL.md call:

    • pip

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Bio Hi C Analysis Hic Data Io loads about 1.7k tokens when it runs. Until then it costs about 65 tokens; SKILL.md has 225 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~65
When it runs · the whole SKILL.md, loaded when a task matches
~1.7k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 225 words (~1,663 tokens).

“Reference examples tested with: cooler 0.9+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, scipy 1.12+”

— opening of SKILL.md by FreedomIntelligence
name
bio-hi-c-analysis-hic-data-io
tool_type
mixed
primary_tool
cooler

Read the full SKILL.md on GitHub

Files

SKILL.md and 2 other files in skills/bio-hi-c-analysis-hic-data-io of FreedomIntelligence/OpenClaw-Medical-Skills.

  • SKILL.md
  • examples/load_cooler.py
  • usage-guide.md

Open the folder on GitHubat commit b1f9b6e

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Bio Hi C Analysis Hic Data Io next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Bio Hi C Analysis Hic Data Io compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Bio Hi C Analysis Hic Data Io this skillFreedomIntelligence/OpenClaw-Medical-Skills3.1k1 repos~1.7kAutomated safety check: PassNone
Django Access Reviewgetsentry/skills1k3 repos~2.6kAutomated safety check: NotesApache-2.0
Backend AI Guidelablup/backend.ai-webui1331 repos~1.8kAutomated safety check: PassLGPL-3.0
Tenuo Audittenuo-ai/tenuo103—~3.6kAutomated safety check: PassApache-2.0
Backend Fastapi Pythonavibebuilder/claude-prime120—~997Automated safety check: PassMIT
Security Sensitive Path InstrumenterArabelaTso/Skills-4-SE253—~1.1kAutomated safety check: PassApache-2.0

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Works with

Categories

Questions about Bio Hi C Analysis Hic Data Io

What does Bio Hi C Analysis Hic Data Io do?

Load, convert, and manipulate Hi-C contact matrices using cooler format. Bio Hi C Analysis Hic Data Io is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Load, convert, and manipulate Hi-C contact matrices using cooler format.

When should I use Bio Hi C Analysis Hic Data Io?

Bio Hi C Analysis Hic Data Io fits situations like: converting Hi-C contact matrices; tasks that involve Authorization and RBAC.

How do I install Bio Hi C Analysis Hic Data Io in Claude Code?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-hi-c-analysis-hic-data-io -a claude-code`. Or copy the skill folder (skills/bio-hi-c-analysis-hic-data-io in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-hi-c-analysis-hic-data-io in your project. Claude Code loads it when a task matches its description.

How do I install Bio Hi C Analysis Hic Data Io in Codex?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-hi-c-analysis-hic-data-io -a codex`. Or copy the skill folder (skills/bio-hi-c-analysis-hic-data-io in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-hi-c-analysis-hic-data-io in your project. Codex loads it when a task matches its description.

Can I use Bio Hi C Analysis Hic Data Io in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-hi-c-analysis-hic-data-io -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-hi-c-analysis-hic-data-io, .gemini/skills/bio-hi-c-analysis-hic-data-io, .github/skills/bio-hi-c-analysis-hic-data-io and .opencode/skills/bio-hi-c-analysis-hic-data-io in your project.

What does Bio Hi C Analysis Hic Data Io need to run?

Going by SKILL.md and its folder, Bio Hi C Analysis Hic Data Io needs Python for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.

Does Bio Hi C Analysis Hic Data Io access the network?

SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.

Is Bio Hi C Analysis Hic Data Io safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Bio Hi C Analysis Hic Data Io use?

No licence was found for Bio Hi C Analysis Hic Data Io or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Bio Hi C Analysis Hic Data Io use?

About 1.7k tokens (SKILL.md is roughly 6.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Bio Hi C Analysis Hic Data Io?

Skills that share tags, products or a category with Bio Hi C Analysis Hic Data Io: Django Access Review (getsentry/skills, 1k stars), Backend AI Guide (lablup/backend.ai-webui, 133 stars), Tenuo Audit (tenuo-ai/tenuo, 103 stars) and Backend Fastapi Python (avibebuilder/claude-prime, 120 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Bio Hi C Analysis Hic Data Io?

FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.

Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.