GitHub organization
Agent skills by FreedomIntelligence, page 2
Skills by FreedomIntelligence, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 49 | Cell segmentation from multiplexed tissue images. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 50 | Load and preprocess imaging mass cytometry (IMC) and MIBI data. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 51 | Quality metrics for IMC data including signal-to-noise, channel correlation, tissue integrity, and acquisition QC. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 52 | Spatial analysis of cell neighborhoods and interactions in IMC data. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 53 | Predict B-cell and T-cell epitopes using BepiPred, IEDB tools, and structure-based methods for vaccine and antibody design. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 54 | Score and prioritize neoantigens and epitopes for immunogenicity using multi-factor models combining MHC binding, processing, expression, and sequence features. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 55 | Predict peptide-MHC class I and II binding affinity using MHCflurry and NetMHCpan neural network models. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 56 | Predict TCR-epitope specificity using ERGO-II and deep learning models for T-cell receptor antigen recognition. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 57 | Analyze PacBio Iso-Seq data for full-length isoform discovery and quantification. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 58 | Tracks ctDNA dynamics over time for treatment response monitoring using serial liquid biopsy samples. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 59 | Align long reads using minimap2 for Oxford Nanopore and PacBio data. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 60 | Polish assemblies and call variants from Oxford Nanopore data using medaka. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 61 | Detect structural variants from long-read alignments using Sniffles, cuteSV, and SVIM. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 62 | Specialized lipidomics analysis for lipid identification, quantification, and pathway interpretation. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 63 | XCMS3 workflow for LC-MS/MS metabolomics preprocessing. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 64 | Species abundance estimation using Bracken with Kraken2 output. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 65 | Detect antimicrobial resistance genes using AMRFinderPlus, ResFinder, and CARD. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 66 | Profile functional potential of metagenomes using HUMAnN3 and similar tools. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 67 | Marker gene-based taxonomic profiling using MetaPhlAn 4. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 68 | Track bacterial strains using MASH, sourmash, fastANI, and inStrain. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 69 | Visualize metagenomic profiles using R (phyloseq, microbiome) and Python (matplotlib, seaborn). | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 70 | Analyzes cfDNA methylation patterns for cancer detection using cfMeDIP-seq or bisulfite sequencing with MethylDackel. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 71 | Bisulfite sequencing read alignment using Bismark with bowtie2/hisat2. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 72 | Differential abundance testing for microbiome data using compositionally-aware methods like ALDEx2, ANCOM-BC2, and MaAsLin2. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 73 | QIIME2 command-line workflow for 16S/ITS amplicon analysis. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 74 | Preprocessing and harmonization of multi-omics data before integration. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 75 | Supervised and unsupervised multi-omics integration with mixOmics. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 76 | Multi-Omics Factor Analysis (MOFA2) for unsupervised integration of multiple data modalities. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 77 | Handle paired-end FASTQ files (R1/R2) using Biopython. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 78 | Visualize enrichment results using enrichplot package functions. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 79 | Perform geometric calculations on protein structures using Biopython Bio.PDB. | FreedomIntelligence/ | 3.1k | 1 repo | ~3.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 80 | Parse and write protein structure files using Biopython Bio.PDB. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 81 | Modify protein structures using Biopython Bio.PDB. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 82 | Navigate protein structure hierarchy using Biopython Bio.PDB SMCRA model. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 83 | Load and parse mass spectrometry data formats including mzML, mzXML, and quantification tool outputs like MaxQuant proteinGroups.txt. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 84 | Data-independent acquisition (DIA) proteomics analysis with DIA-NN and other tools. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 85 | Peptide-spectrum matching and protein identification from MS/MS data. | FreedomIntelligence/ | 3.1k | 1 repo | ~983 | Automated safety check: Pass | No licence | 2 mo ago |
| 86 | Post-translational modification analysis including phosphorylation, acetylation, and ubiquitination. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 87 | Protein quantification from mass spectrometry data including label-free (LFQ, intensity-based), isobaric labeling (TMT, iTRAQ), and metabolic labeling (SILAC) approaches. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 88 | Build, manage, and search spectral libraries for proteomics. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 89 | Remove sequencing adapters from FASTQ files using Cutadapt and Trimmomatic. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 90 | Detect sample contamination and cross-species reads using FastQ Screen. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 91 | Filter reads by quality scores, length, and N content using Trimmomatic and fastp. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 92 | Generate and interpret quality reports from FASTQ files using FastQC and MultiQC. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 93 | Extract, process, and deduplicate reads using Unique Molecular Identifiers (UMIs) with umitools. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 94 | Read biological sequence files (FASTA, FASTQ, GenBank, EMBL, ABI, SFF) using Biopython Bio.SeqIO. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 95 | Preprocess ribosome profiling data including adapter trimming, size selection, rRNA removal, and alignment. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 96 | Detect ribosome pausing and stalling sites from Ribo-seq data at codon resolution. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
