GitHub organization
Agent skills by FreedomIntelligence, page 3
Skills by FreedomIntelligence, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 97 | Calculate translation efficiency (TE) as the ratio of ribosome occupancy to mRNA abundance. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 98 | Infer cell-cell communication networks from scRNA-seq data using CellChat, NicheNet, and LIANA for ligand-receptor interaction analysis. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 99 | Read, write, and create single-cell data objects using Seurat (R) and Scanpy (Python). | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 100 | Detect and remove doublets (multiple cells captured in one droplet) from single-cell RNA-seq data. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 101 | Reconstruct cell lineage trees from CRISPR barcode tracing or mitochondrial mutations. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 102 | Analyze metabolite-mediated cell-cell communication using MeboCost for metabolic signaling inference between cell types. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 103 | Analyze Perturb-seq and CROP-seq CRISPR screening data integrated with scRNA-seq. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 104 | Quality control, filtering, and normalization for single-cell RNA-seq using Seurat (R) and Scanpy (Python). | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 105 | Single-cell ATAC-seq analysis with Signac (R/Seurat) and ArchR. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 106 | Infer developmental trajectories and pseudotime from single-cell RNA-seq data using Monocle3, Slingshot, and scVelo for RNA velocity analysis. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 107 | Process and analyze tissue images from spatial transcriptomics data using Squidpy. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 108 | Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 109 | Analyze high-resolution spatial platforms like Slide-seq, Stereo-seq, and Visium HD. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 110 | Analyzes spatial proteomics data from CODEX, IMC, and MIBI platforms including cell segmentation and protein colocalization. | FreedomIntelligence/ | 3.1k | 1 repo | ~976 | Automated safety check: Pass | No licence | 2 mo ago |
| 111 | Access and analyze AlphaFold protein structure predictions. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 112 | Predict protein structures using modern ML models including AlphaFold3, ESMFold, Chai-1, and Boltz-1. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 113 | Perform V(D)J alignment and clonotype assembly from TCR-seq or BCR-seq data using MiXCR. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 114 | Calculate immune repertoire diversity metrics, compare samples, and track clonal dynamics using VDJtools. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 115 | Estimates circulating tumor DNA fraction from shallow whole-genome sequencing using ichorCNA. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 116 | Comprehensive variant annotation using bcftools annotate/csq, VEP, SnpEff, and ANNOVAR. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 117 | Call SNPs and indels from aligned reads using bcftools mpileup and call. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 118 | Clinical variant interpretation using ClinVar, ACMG guidelines, and pathogenicity predictors. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 119 | Deep learning-based variant calling with Google DeepVariant. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 120 | Comprehensive variant filtering including GATK VQSR, hard filters, bcftools expressions, and quality metric interpretation for SNPs and indels. | FreedomIntelligence/ | 3.1k | 1 repo | ~3.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 121 | Joint genotype calling across multiple samples using GATK CombineGVCFs and GenotypeGVCFs. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 122 | 122.Bio Vcf Basics View, query, and understand VCF/BCF variant files using bcftools and cyvcf2. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 123 | Merge, concatenate, sort, intersect, and subset VCF files using bcftools. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 124 | Generate variant statistics, sample concordance, and quality metrics using bcftools stats and gtcheck. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 125 | 125.Pubmed Search Search PubMed for scientific literature. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~751 | Automated safety check: Pass | No licence | 2 mo ago |
| 126 | Trauma-informed AI moderator for addiction recovery communities. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 127 | 127.Wikipedia Search Search and fetch structured content from Wikipedia using the MediaWiki API for reliable, encyclopedic information | FreedomIntelligence/ | 3.1k | 1 repo | ~3.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 128 | Analyzes living systems and biological phenomena through biological lens using evolution, molecular biology, ecology, and systems biology frameworks. | FreedomIntelligence/ | 3.1k | 1 repo | ~8.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 129 | 129.Chemist Analyst Analyzes events through chemistry lens using molecular structure, reaction mechanisms, thermodynamics, kinetics, and analytical techniques (spectroscopy, chromatography, mass spectrometry). | FreedomIntelligence/ | 3.1k | 1 repo | ~13k | Automated safety check: Pass | No licence | 2 mo ago |
| 130 | 130.Labstep Interact with the Labstep electronic lab notebook API using labstepPy. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 131 | Extract medical entities (symptoms, medications, lab values, diagnoses) from patient messages. | FreedomIntelligence/ | 3.1k | 1 repo | ~969 | Automated safety check: Pass | MIT | 2 mo ago |
| 132 | 132.Patiently AI Patiently AI simplifies medical documents for patients. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~986 | Automated safety check: Pass | No licence | 2 mo ago |
| 133 | Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files. | FreedomIntelligence/ | 3.1k | 1 repo | ~850 | Automated safety check: Pass | No licence | 2 mo ago |
| 134 | 134.Usmle Prepare for US medical licensing exams with progress tracking, weak area analysis, question bank management, and residency match planning. | FreedomIntelligence/ | 3.1k | 1 repo | ~670 | Automated safety check: Pass | No licence | 2 mo ago |
| 135 | Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser. | FreedomIntelligence/ | 3.1k | 1 repo | ~353 | Automated safety check: Pass | MIT | 2 mo ago |
| 136 | An AI agent for therapeutic discovery that executes transparent, multi-step omics analyses including research planning, code execution, and literature reasoning. | FreedomIntelligence/ | 3.1k | 1 repo | ~416 | Automated safety check: Pass | MIT | 2 mo ago |
| 137 | Predicts ADMET properties using ADMETlab 3.0 API or DeepChem models. | FreedomIntelligence/ | 3.1k | — | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 138 | Call accessible chromatin regions from ATAC-seq data using MACS3 with ATAC-specific parameters. | FreedomIntelligence/ | 3.1k | — | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 139 | Quality control metrics for ATAC-seq data including fragment size distribution, TSS enrichment, FRiP, and library complexity. | FreedomIntelligence/ | 3.1k | — | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 140 | Extract nucleosome positions from ATAC-seq data using NucleoATAC, ATACseqQC, and fragment analysis. | FreedomIntelligence/ | 3.1k | — | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 141 | Test whether two traits share a causal variant at a genomic locus using Bayesian colocalization with coloc. | FreedomIntelligence/ | 3.1k | — | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 142 | Identify likely causal variants within GWAS loci using SuSiE for sum of single effects regression and FINEMAP for shotgun stochastic search. | FreedomIntelligence/ | 3.1k | — | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 143 | Estimate causal effects between exposures and outcomes using genetic variants as instrumental variables with TwoSampleMR. | FreedomIntelligence/ | 3.1k | — | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 144 | 144.Bio Chipseq Qc ChIP-seq quality control metrics including FRiP (Fraction of Reads in Peaks), cross-correlation analysis (NSC/RSC), library complexity, and IDR (Irreproducibility Discovery Rate) for replicate… | FreedomIntelligence/ | 3.1k | — | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
