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PubMed agent skills for Claude Code, Codex and other agents.

NIH's free search engine for biomedical and life-science literature, with the Entrez API.
skills
130
Type
Other
Website
pubmed.ncbi.nlm.nih.gov

PubMed skills, ranked

Ranked by score. Sort bymost stars,trending,newest,recently updated

PubMed skills, ranked
#SkillRepositoryStarsUsed inTokensAuto-checkLicenceUpdated
1

Screens records for systematic, scoping and rapid reviews against fixed eligibility rules, using two blinded AI reviewers and a third adjudicator, with traceable PRISMA counts.

Imbad0202/academic-research-skills51k—~8.4kAutomated safety check: PassUnknown4 days ago
2

Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.).

neflibata-feng/MyArxiv-Agent12621 repos~5.9kAutomated safety check: NotesMIT3 days ago
3

Finds papers in OpenAlex, PubMed and Google Scholar, turns DOIs, PMIDs and arXiv IDs into clean BibTeX, and validates citations for a manuscript or thesis.

K-Dense-AI/claude-scientific-writer2.4k2 repos~3.9kAutomated safety check: NotesMIT7 days ago
4

Comprehensive citation management for academic research. An agent skill from neflibata-feng/MyArxiv-Agent.

neflibata-feng/MyArxiv-Agent12620 repos~8.1kAutomated safety check: NotesMIT3 days ago
5

Search, download, and read academic papers from 20+ sources (arXiv, PubMed, Semantic Scholar, CrossRef, etc).

openags/paper-search-mcp2.8k—~1.2kAutomated safety check: NotesMIT5 days ago
6

Deterministic deep research via RivalSearchMCP. An agent skill from damionrashford/RivalSearchMCP.

damionrashford/RivalSearchMCP1321 repo~796Automated safety check: PassMITtoday
7

A skill your agent uses when users ask to 找文献、做文献检索、查论文、查临床试验、核验引用、去重文献、设计 PubMed/MeSH 检索式、追踪上下游引文、解析 DOI/PMID/PMCID/arXiv/OpenAlex/Semantic Scholar/NCT ID, 或导出 RIS、BibTeX、NBIB、ENW;also use for…

wp-a/nature-academic-search297—~1.4kAutomated safety check: PassMIT6 days ago
8

Routes literature searches through the PaperSeek launcher, picks suitable scholarly sources, parses JSON output and keeps API keys out of the chat.

MingfengHong/paperseek200—~1.6kAutomated safety check: PassApache-2.02 days ago
9

Recommends journals for a manuscript by filtering a bundled impact-factor catalog, verifying scope and quality online, and writing a ranked Markdown report.

huangwb8/ChineseResearchLaTeX2.9k—~1.7kAutomated safety check: PassMIT3 days ago
10

Search, download, and read academic papers through the paper-search MCP tools (mcppaper-search), covering arXiv, PubMed, bioRxiv, Semantic Scholar, Crossref, OpenAlex and 15+ other sources.

openags/paper-search-mcp2.8k—~794Automated safety check: NotesMIT5 days ago
11

Finds papers across literature sources, verifies and converts citations, builds MeSH strategies and audits independent citations of a paper.

Yuan1z0825/nature-skills46k—~884Automated safety check: PassApache-2.0today
12

Multi-source literature search, citation verification, MeSH search strategy, citation file management (.nbib/.ris/.bib conversion), and reference management (BibTeX, related articles, ID conversion)…

jing1312/nature-figure-skill161—~1.3kAutomated safety check: NotesMIT29 days ago
13

Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research.

FreedomIntelligence/OpenClaw-Medical-Skills3.1k1 repo~2.4kAutomated safety check: PassNo licence2 mo ago
14

学术文献检索与论文获取调度器,基于 paper-search CLI,而不是 MCP server. An agent skill from dr-dumpling/paper-search-cli.

dr-dumpling/paper-search-cli135—~1.1kAutomated safety check: PassMIT3 mo ago
15

Search and retrieve clinical practice guidelines across 12+ authoritative sources including NICE, WHO, ADA, AHA/ACC, NCCN, SIGN, CPIC, CMA, CTFPHC, GIN, MAGICapp, PubMed, EuropePMC, TRIP, and…

wu-yc/LabClaw1.1k2 repos~4.9kAutomated safety check: PassNo licence6 mo ago
16

Search 10 academic literature APIs for papers, preprints, citations, and open-access full text, and return results with reproducible provenance.

spacering-net/codeg3.8k—~3.7kAutomated safety check: NotesMITtoday
17

Publish proofread VDJdb chunks through dev, reconcile publication issues, preserve record identity, keep validation changes separate, and close completed imports while tracking unresolved…

antigenomics/vdjdb-db157—~1.5kAutomated safety check: PassUnknowntoday
18

Exhaustively verify English and Chinese manuscript references before journal submission.

Liuxiangjian-ai/reference-checker-skill138—~5.4kAutomated safety check: PassMIT4 mo ago
19

中文文献检索、筛选、批量采集和合法全文获取助手。用于用户需要查找论文、下载可合法获取的 PDF/HTML/XML 全文、生成关键词和检索式、查询 DOI/PMID、筛选高影响因子或高分区期刊、检查开放获取、做引用链扩展、批量文献候选表、下载日志、去重清单、Zotero/BibTeX 整理,或解决文献难下载问题;禁止绕过付费墙、盗版下载、共享账号或规避版权限制。

Lucaswangzcx/literature-downloader-skill234—~1.4kAutomated safety check: PassMIT5 mo ago
20

Runs systematic, scoping or narrative literature reviews across PubMed, arXiv, bioRxiv and Semantic Scholar, with citation checks and Markdown or PDF output.

K-Dense-AI/scientific-agent-skills48k1 repo~3.2kAutomated safety check: NotesMIT2 days ago
21

多源深度调研与专业报告生成。适用场景广泛——只要用户的问题涉及需要深度分析的专业话题,就应使用此技能。包括但不限于:(1) 用户明确要求调研/research/综述/报告/发现;(2) 用户提出一个技术或科学话题,话题复杂度需要多源深度分析;(3) 用户要求对比多种技术方案的优劣;(4) 涉及生物医药、蛋白质、基因、药物靶点等需要专业数据库支撑的问题。核心能力:根据问题性质自动组合 arXiv…

AgentTeam-TaichuAI/ScienceClaw670—~5.7kAutomated safety check: PassNo licence5 mo ago
22

Searches PubMed directly through its E-utilities REST API, with guidance on Boolean and MeSH query syntax, batch retrieval and citation data.

davila7/claude-code-templates32k15 repos~3.9kAutomated safety check: PassMITtoday
23

Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles.

zLanqing/codex-claude-academic-skills4.6k3 repos~2.4kAutomated safety check: NotesMIT4 mo ago
24

Local workflow that searches PubMed, Europe PMC, Crossref and OpenAlex for topic keywords, downloads accessible PDFs into a PDF-only folder and removes duplicates.

Jinze-Lee/codex-skills-workbench108—~952Automated safety check: PassMIT5 mo ago
25

A skill your agent uses when writing literature review sections - guides searching, organizing, and synthesizing academic sources

Norman-bury/research-writing-skill3.3k—~2.2kAutomated safety check: NotesMIT3 mo ago
26

Primary Python toolkit for molecular biology. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates32k13 repos~3.4kAutomated safety check: PassMITtoday
27

Conduct literature searches for meta-analysis using Python with uv, query PubMed and other databases, deduplicate results, and store round-based bibliographies with notes.

htlin222/meta-pipe134—~2.1kAutomated safety check: NotesUnknown14 days ago
28

Search PubMed for scientific literature, including published clinical trials.

google-deepmind/science-skills3.2k2 repos~2.1kAutomated safety check: NotesApache-2.022 days ago
29

Access 1000+ scientific tools through ToolUniverse for drug discovery, protein analysis, genomics, literature search, clinical data, ADMET prediction, molecular docking, and more.

AgentTeam-TaichuAI/ScienceClaw670—~1.2kAutomated safety check: PassNo licence5 mo ago
30

Retrieve protein and nucleotide sequences from NCBI databases using E-utilities.

google-deepmind/science-skills3.2k1 repo~2.3kAutomated safety check: NotesApache-2.022 days ago
31

Recommends target journals for manuscript submission by analyzing the paper topic/abstract and the journal distribution of similar PubMed literature; use when users ask for journal…

aipoch/medical-research-skills2k—~1.7kAutomated safety check: PassMIT20 days ago
32

Turns DOIs, PMIDs and arXiv IDs into clean BibTeX, searches Google Scholar and PubMed, and checks and deduplicates a reference list.

foryourhealth111-pixel/Vibe-Skills3.6k—~7.6kAutomated safety check: NotesMIT1 mo ago
33

Benchmark LLM reference recommendation capabilities by verifying every cited paper against Crossref, PubMed, arXiv, and DBLP.

agentscope-ai/OpenJudge8671 repo~2.4kAutomated safety check: PassApache-2.026 days ago
34

Zero-cost fallback for the argo search skill, wrapping 29 local engines for web, news, academic, code and reference queries when paid API quota should be saved.

taxueseek/argo184—~949Automated safety check: PassMITyesterday
35

Academic paper search and metrics analysis. An agent skill from ShZhao27208/Aut_Sci_Write.

ShZhao27208/Aut_Sci_Write207—~1.7kAutomated safety check: NotesMIT1 mo ago
36

Programmatic PubMed access via NCBI E-utilities REST API. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills3701 repo~4.4kAutomated safety check: PassCC-BY-4.08 days ago
37

Lays out a systematic literature review method: PICO-based search strategy, inclusion criteria, PRISMA screening, quality assessment tools and synthesis approaches.

aiming-lab/AutoResearchClaw15k—~709Automated safety check: PassMIT1 mo ago
38

Direct PubMed and NCBI E-utilities search workflows for biomedical literature, MeSH queries, PMID lookup, citation retrieval, and API-backed literature monitoring.

affaan-m/ECC274k1 repo~1.2kAutomated safety check: PassMIT2 days ago
39

Semantic Similarity Index for disease research literature using PubMedBERT embeddings

ClawBio/ClawBio1.2k3 repos~1.4kAutomated safety check: PassMITyesterday
40

Produce an intensive, cited analytical report: executive summary, multi-angle findings, contrarian views, open questions, and full sources.

firecrawl/skills115—~1.4kAutomated safety check: PassISCyesterday
41

Searches and fetches PubMed and PMC via NCBI E-utilities (ESearch then EFetch/ESummary) to gather biomedical evidence and build text corpora.

maziyarpanahi/openmed5.5k—~1.7kAutomated safety check: PassApache-2.0yesterday
42

学术论文 PDF 下载。支持 8 个数据源:Elsevier、Springer Nature、IEEE Xplore、 arXiv、Unpaywall、Semantic Scholar、PubMed Central、知网(CNKI)。

ShZhao27208/Aut_Sci_Write207—~1kAutomated safety check: NotesMIT1 mo ago
43

Multi-database literature search and search-strategy design that outputs structured, reproducible result lists; use when you need reference retrieval, systematic searching, review topic selection…

aipoch/medical-research-skills2k—~2kAutomated safety check: PassMIT20 days ago
44

Provides Biopython workflows for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez).

K-Dense-AI/scientific-agent-skills48k1 repo~4.3kAutomated safety check: NotesMIT2 days ago
45

analyze a professor from google scholar, publication lists, personal websites, lab pages, and field-specific bibliographic databases (e.g., DBLP, PubMed, SSRN, PhilPapers, MathSciNet, arXiv, Scopus)…

voidful/academic-skills132—~13kAutomated safety check: PassMIT6 mo ago
46

Computational molecular biology library (sequence I/O, alignment, phylogenetics).

lamm-mit/scienceclaw244—~3.9kAutomated safety check: PassApache-2.01 mo ago
47

Multi-source literature search, citation verification, strict independent other-citation audits, article-level citation metric tables, influential citer profiling with citation-context extraction…

Tai609/NebulaMat100—~1.2kAutomated safety check: PassUnknown1 mo ago
48

Search scientific papers via the BGPT MCP server and retrieve structured experimental data — methods, results, conclusions, quality scores, and 25+ metadata fields per paper.

ClawBio/ClawBio1.2k1 repo~3.2kAutomated safety check: PassMITyesterday

Questions, answered from the data.

What is the best PubMed skill?

Systematic Review Screener from Imbad0202/academic-research-skills ranks first of the 130 PubMed skills listed here, with the highest score: its repository has 51k GitHub stars, its SKILL.md loads about 8.4k tokens and it passes the automated safety check with no findings. Next come Literature Review and Citation Management.

Is there an official PubMed skill?

None yet. All 130 PubMed skills listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.

How are these skills ranked?

By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.