Bio Flow Cytometry Doublet Detection
GPTomics/bioSkills
Detects and removes doublets/aggregates from flow, spectral, and mass cytometry before clustering or quantification.
Agent skill
Bio Flow Cytometry Doublet Detection
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Detect and remove doublets from flow and mass cytometry data.
No licenceAuto-check passed
Install Bio Flow Cytometry Doublet Detection
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-doublet-detection -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-doublet-detection --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-flow-cytometry-doublet-detection .claude/skills/bio-flow-cytometry-doublet-detection && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-flow-cytometry-doublet-detection" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-doublet-detection into .claude/skills/bio-flow-cytometry-doublet-detection/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-doublet-detection", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-doublet-detectionType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-doublet-detection -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-doublet-detection --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-flow-cytometry-doublet-detection .agents/skills/bio-flow-cytometry-doublet-detection && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-flow-cytometry-doublet-detection" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-doublet-detection into .agents/skills/bio-flow-cytometry-doublet-detection/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-doublet-detection", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-doublet-detection -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-doublet-detection --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-flow-cytometry-doublet-detection .cursor/skills/bio-flow-cytometry-doublet-detection && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-flow-cytometry-doublet-detection" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-doublet-detection into .cursor/skills/bio-flow-cytometry-doublet-detection/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-doublet-detection", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-flow-cytometry-doublet-detection--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-doublet-detection -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-doublet-detection --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-flow-cytometry-doublet-detection .gemini/skills/bio-flow-cytometry-doublet-detection && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-flow-cytometry-doublet-detection" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-doublet-detection into .gemini/skills/bio-flow-cytometry-doublet-detection/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-doublet-detection", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-doublet-detectionInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-doublet-detection -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-flow-cytometry-doublet-detection .github/skills/bio-flow-cytometry-doublet-detection && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-flow-cytometry-doublet-detection" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-doublet-detection into .github/skills/bio-flow-cytometry-doublet-detection/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-doublet-detection", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-doublet-detection -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-flow-cytometry-doublet-detection --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-flow-cytometry-doublet-detection .opencode/skills/bio-flow-cytometry-doublet-detection && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-flow-cytometry-doublet-detection" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-flow-cytometry-doublet-detection into .opencode/skills/bio-flow-cytometry-doublet-detection/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-flow-cytometry-doublet-detection", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-flow-cytometry-doublet-detection- GitHub stars
- 3.1k
- Used in
- 1 other repo
- Token cost
- ~2k tokens
- SKILL.md length
- 203 words
- Files
- 3
- Skills in repo
- 170
- Repo updated
- First seen
- Licence
- None found
At a glance
Detect and remove doublets from flow and mass cytometry data.
- Filtering out cell aggregates before clustering
- SKILL.md covers Version Compatibility, FSC-A vs FSC-H Gating…, Automated Singlet Gating with… and flowAI Quality Control, plus 8 more sections
- Runs R scripts from its folder
- Quantitative analysis
What it does
Bio Flow Cytometry Doublet Detection is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Detect and remove doublets from flow and mass cytometry data. Covers FSC/SSC gating and computational doublet detection methods. Use when filtering out cell aggregates before clustering or quantitative analysis.
Its SKILL.md is about 2k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `usage-guide.md`).
The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Filtering out cell aggregates before clustering
- Quantitative analysis
Example prompts
- “/bio-flow-cytometry-doublet-detection”
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (R), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Flow Cytometry Doublet Detection loads about 2k tokens when it runs. Until then it costs about 62 tokens; SKILL.md has 203 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 203 words (~1,960 tokens).
“Reference examples tested with: flowCore 2.14+, ggplot2 3.5+”
- name
- bio-flow-cytometry-doublet-detection
- tool_type
- r
- primary_tool
- flowCore
Files
SKILL.md and 2 other files in skills/bio-flow-cytometry-doublet-detection of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/detect_doublets.R
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Used in 1 other repository
We found 2 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Bio Flow Cytometry Doublet Detection next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Flow Cytometry Doublet Detection this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~2k | Automated safety check: Pass | None | |
| Bio Flow Cytometry Doublet DetectionGPTomics/bioSkills | 1.2k | 1 repos | ~2k | Automated safety check: Pass | MIT | |
| Bio Single Cell Doublet DetectionGPTomics/bioSkills | 1.2k | 1 repos | ~3.3k | Automated safety check: Pass | MIT | |
| Bio Flow Cytometry Cytometry QcGPTomics/bioSkills | 1.2k | 1 repos | ~2.5k | Automated safety check: Pass | MIT | |
| Bio Imaging Mass Cytometry Data PreprocessingGPTomics/bioSkills | 1.2k | 1 repos | ~4.2k | Automated safety check: Pass | MIT | |
| Bio Imaging Mass Cytometry PhenotypingGPTomics/bioSkills | 1.2k | 1 repos | ~3.5k | Automated safety check: Pass | MIT |
Similar skills
Bio Single Cell Doublet Detection
GPTomics/bioSkills
Detect and remove doublets (two or more cells in one droplet) from single-cell RNA-seq using scDblFinder (R), Scrublet (Python), and DoubletFinder (R).
Bio Flow Cytometry Cytometry Qc
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Quality control for flow, spectral, and mass cytometry - time-based anomaly cleaning (flowAI, flowCut, PeacoQC, flowClean), margin/boundary event removal, signal-drift detection, dead-cell…
Bio Imaging Mass Cytometry Data Preprocessing
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Load and preprocess imaging mass cytometry (IMC) and MIBI data from raw MCD/TXT through hot-pixel removal, spillover compensation, and variance-stabilizing transformation, covering readimc/steinbock…
Bio Imaging Mass Cytometry Phenotyping
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Assign cell types from marker expression in IMC/MIBI data using clustering (PhenoGraph/FlowSOM/Leiden/Pixie), marker-based probabilistic classifiers (Astir), or image-context CNNs (CellSighter)…
Bio Imaging Mass Cytometry Cell Segmentation
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Segment single cells from multiplexed IMC/MIBI tissue images using Mesmer/DeepCell, Cellpose, or ilastik+CellProfiler, covering whole-cell vs nuclear segmentation, the summed-membrane-channel…
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Questions about Bio Flow Cytometry Doublet Detection
What does Bio Flow Cytometry Doublet Detection do?
Detect and remove doublets from flow and mass cytometry data. Bio Flow Cytometry Doublet Detection is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Detect and remove doublets from flow and mass cytometry data.
When should I use Bio Flow Cytometry Doublet Detection?
Bio Flow Cytometry Doublet Detection fits situations like: filtering out cell aggregates before clustering; quantitative analysis.
How do I install Bio Flow Cytometry Doublet Detection in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-doublet-detection -a claude-code`. Or copy the skill folder (skills/bio-flow-cytometry-doublet-detection in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-flow-cytometry-doublet-detection in your project. Claude Code loads it when a task matches its description.
How do I install Bio Flow Cytometry Doublet Detection in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-doublet-detection -a codex`. Or copy the skill folder (skills/bio-flow-cytometry-doublet-detection in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-flow-cytometry-doublet-detection in your project. Codex loads it when a task matches its description.
Can I use Bio Flow Cytometry Doublet Detection in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-flow-cytometry-doublet-detection -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-flow-cytometry-doublet-detection, .gemini/skills/bio-flow-cytometry-doublet-detection, .github/skills/bio-flow-cytometry-doublet-detection and .opencode/skills/bio-flow-cytometry-doublet-detection in your project.
What does Bio Flow Cytometry Doublet Detection need to run?
Going by SKILL.md and its folder, Bio Flow Cytometry Doublet Detection needs R for the scripts in its folder.
Does Bio Flow Cytometry Doublet Detection access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Bio Flow Cytometry Doublet Detection safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Flow Cytometry Doublet Detection use?
No licence was found for Bio Flow Cytometry Doublet Detection or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Flow Cytometry Doublet Detection use?
About 2k tokens (SKILL.md is roughly 7.8k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Flow Cytometry Doublet Detection?
Skills that share tags, products or a category with Bio Flow Cytometry Doublet Detection: Bio Flow Cytometry Doublet Detection (GPTomics/bioSkills, 1.2k stars), Bio Single Cell Doublet Detection (GPTomics/bioSkills, 1.2k stars), Bio Flow Cytometry Cytometry Qc (GPTomics/bioSkills, 1.2k stars) and Bio Imaging Mass Cytometry Data Preprocessing (GPTomics/bioSkills, 1.2k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Flow Cytometry Doublet Detection?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 170 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.