GitHub organization
Agent skills by FreedomIntelligence, page 4
Skills by FreedomIntelligence, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 145 | Identifies super-enhancers from H3K27ac ChIP-seq data using ROSE and related tools. | FreedomIntelligence/ | 3.1k | — | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 146 | Visualize ChIP-seq data using deepTools, Gviz, and ChIPseeker. | FreedomIntelligence/ | 3.1k | — | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 147 | Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. | FreedomIntelligence/ | 3.1k | — | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 148 | Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. | FreedomIntelligence/ | 3.1k | — | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 149 | Call HLA alleles from NGS data using OptiType, HLA-HD, or arcasHLA for immunogenomics applications. | FreedomIntelligence/ | 3.1k | — | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 150 | Query PharmGKB and CPIC for drug-gene interactions, pharmacogenomic annotations, and dosing guidelines. | FreedomIntelligence/ | 3.1k | — | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 151 | Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics. | FreedomIntelligence/ | 3.1k | — | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 152 | Extract and analyze mutational signatures from somatic variants using SigProfiler or MutationalPatterns to characterize mutagenic processes. | FreedomIntelligence/ | 3.1k | — | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 153 | Filter and prioritize variants by pathogenicity, population frequency, and clinical evidence for rare disease analysis. | FreedomIntelligence/ | 3.1k | — | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 154 | Annotate CNVs with genes, pathways, and clinical significance. | FreedomIntelligence/ | 3.1k | — | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 155 | Detect copy number variants from targeted/exome sequencing using CNVkit. | FreedomIntelligence/ | 3.1k | — | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 156 | Statistical methods for calling hits in CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 157 | MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout) for pooled CRISPR screen analysis. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 158 | Quality control for pooled CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 159 | Detects differential alternative splicing between conditions using rMATS-turbo (BAM-based) or SUPPA2 diffSplice (TPM-based). | FreedomIntelligence/ | 3.1k | — | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 160 | Analyzes isoform switching events and functional consequences using IsoformSwitchAnalyzeR. | FreedomIntelligence/ | 3.1k | — | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 161 | Calculates molecular descriptors and fingerprints using RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 162 | 162.Bio Molecular Io Reads, writes, and converts molecular file formats (SMILES, SDF, MOL2, PDB) using RDKit and Open Babel. | FreedomIntelligence/ | 3.1k | — | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 163 | Enumerates chemical libraries through reaction SMARTS transformations using RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 164 | Creates sashimi plots showing RNA-seq read coverage and splice junction counts using ggsashimi or rmats2sashimiplot. | FreedomIntelligence/ | 3.1k | — | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 165 | Performs molecular similarity searches using Tanimoto coefficient on fingerprints via RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 166 | Analyzes alternative splicing at single-cell resolution using BRIE2 for probabilistic PSI estimation or leafcutter2 for cluster-based analysis with NMD detection. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 167 | 167.Bio Splicing Qc Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 168 | Quantifies alternative splicing events (PSI/percent spliced in) from RNA-seq using SUPPA2 from transcript TPM or rMATS-turbo from BAM files. | FreedomIntelligence/ | 3.1k | — | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 169 | Searches molecular libraries for substructure matches using SMARTS patterns with RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 170 | Call structural variants (SVs) from short-read sequencing using Manta, Delly, and LUMPY. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 171 | Normalize indel representation and split multiallelic variants using bcftools norm. | FreedomIntelligence/ | 3.1k | — | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 172 | Performs structure-based virtual screening using AutoDock Vina 1.2 for molecular docking. | FreedomIntelligence/ | 3.1k | — | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 173 | Local Scanpy pipeline for single-cell RNA-seq QC, clustering, marker discovery, and optional two-group differential expression from raw-count .h5ad. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | MIT | 2 mo ago |
