Validate material sample annotations and data structures against ontology constraints.

No licenceAuto-check: notes

Install Ontology Validator

skills CLI
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill ontology-validator -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills ontology-validator --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/ontology-validator .claude/skills/ontology-validator && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
ontology-validator
GitHub stars
3.1k
Used in
1 other repo
Token cost
~1.4k tokens
SKILL.md length
343 words
Files
7 (incl. scripts, references)
Skills in repo
170
Repo updated
First seen
Licence
None found

At a glance

Validate material sample annotations and data structures against ontology constraints.

  • Works in 3 steps: After mapping a sample with… → For a specific class, use… → When building relationships between…
  • Checking if CMSO annotations are correct
  • SKILL.md covers Goal, Requirements, Inputs to Gather and Decision Guidance, plus 9 more sections
  • Runs Python scripts from its folder; calls python3

What it does

Ontology Validator is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Validate material sample annotations and data structures against ontology constraints. Use when checking if CMSO annotations are correct, verifying that required properties are present, or validating that object property relationships have consistent domain and range. Catches unknown classes, unknown properties, domain mismatches, and missing required fields.

Its SKILL.md is about 1.4k tokens, which your agent loads only when the skill is triggered. The skill folder holds 8 other files, including scripts and reference files (for example `references/asmo_constraints.json`, `references/cmso_constraints.json` and `references/validation_rules.md`).

The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.

When your agent uses it

  • Checking if CMSO annotations are correct
  • Verifying that required properties are present
  • Validating that object property relationships have consistent domain and range

Example prompts

  • “/ontology-validator”

Requirements

  • Python 3
  • Pre-approved tools (allowed-tools): Read, Bash

Workflow steps

3 steps, taken from the first numbered list in SKILL.md.

  1. After mapping a sample with ontology-mapper, pass the annotations to schema_checker.py to verify correctness.
  2. For a specific class, use completeness_checker.py to see what required/recommended properties are missing.
  3. When building relationships between instances, use relationship_checker.py to ensure domain/range consistency.

What it can do on your machine

Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves these tools, so the agent can use them without asking each time:

    • Read
    • Bash

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships 3 files in scripts/ (Python), which the agent can run.

    Shell commands in SKILL.md call:

    • python3

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Ontology Validator loads about 1.4k tokens when it runs, and up to ~2.5k if it reads all its reference files. Until then it costs about 95 tokens; SKILL.md has 343 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~95
When it runs · the whole SKILL.md, loaded when a task matches
~1.4k
With references · SKILL.md plus every file in references/, read only if the agent opens them
~2.5k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check: notes

The automated check noted patterns worth knowing about, such as sudo or a known installer.

  • NotePre-approves every shell command (allowed-tools: Bash)SKILL.md
    allowed-tools: Read, Bash

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 343 words (~1,434 tokens).

“Validate that material sample annotations comply with ontology constraints: correct class names, valid properties, consistent domain/range relationships, and required fields present.”

— opening of SKILL.md by FreedomIntelligence
name
ontology-validator
allowed-tools
Read, Bash

Read the full SKILL.md on GitHub

Files

SKILL.md and 6 other files (scripts, references) in skills/ontology-validator of FreedomIntelligence/OpenClaw-Medical-Skills.

  • SKILL.md
  • references/asmo_constraints.json
  • references/cmso_constraints.json
  • references/validation_rules.md
  • scripts/completeness_checker.py
  • scripts/relationship_checker.py
  • scripts/schema_checker.py

Open the folder on GitHubat commit b1f9b6e

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Ontology Validator next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Ontology Validator compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Ontology Validator this skillFreedomIntelligence/OpenClaw-Medical-Skills3.1k1 repos~1.4kAutomated safety check: NotesNone
Validate Release-Note Code Samplesdotnet/core22k—~1.4kAutomated safety check: PassMIT
Bio Structural Biology Structure ValidationGPTomics/bioSkills1.2k1 repos~5.9kAutomated safety check: PassMIT
Form Validationthedaviddias/Front-End-Checklist74k—~633Automated safety check: PassMIT
Validate Pluginruvnet/ruflo74k—~511Automated safety check: NotesMIT
Wireframe Annotatednexu-io/open-design100k—~960Automated safety check: PassApache-2.0

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Questions about Ontology Validator

What does Ontology Validator do?

Validate material sample annotations and data structures against ontology constraints. Ontology Validator is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Validate material sample annotations and data structures against ontology constraints.

When should I use Ontology Validator?

Ontology Validator fits situations like: checking if CMSO annotations are correct; verifying that required properties are present; validating that object property relationships have consistent domain and range.

How do I install Ontology Validator in Claude Code?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill ontology-validator -a claude-code`. Or copy the skill folder (skills/ontology-validator in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/ontology-validator in your project. Claude Code loads it when a task matches its description.

How do I install Ontology Validator in Codex?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill ontology-validator -a codex`. Or copy the skill folder (skills/ontology-validator in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/ontology-validator in your project. Codex loads it when a task matches its description.

Can I use Ontology Validator in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill ontology-validator -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/ontology-validator, .gemini/skills/ontology-validator, .github/skills/ontology-validator and .opencode/skills/ontology-validator in your project.

What does Ontology Validator need to run?

Going by SKILL.md and its folder, Ontology Validator needs Python for the scripts in its folder and the command-line tools its instructions call (python3). Our summary lists: Python 3. Its frontmatter pre-approves these tools: Read, Bash.

Does Ontology Validator access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Ontology Validator safe to install?

Our automated static check of SKILL.md found notes only (pre-approves every shell command (allowed-tools: bash)), nothing it rates as a warning. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.

What licence does Ontology Validator use?

No licence was found for Ontology Validator or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Ontology Validator use?

About 1.4k tokens (SKILL.md is roughly 5.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 1.1k tokens, read only when the agent opens those files.

What are the alternatives to Ontology Validator?

Skills that share tags, products or a category with Ontology Validator: Validate Release-Note Code Samples (dotnet/core, 22k stars), Bio Structural Biology Structure Validation (GPTomics/bioSkills, 1.2k stars), Form Validation (thedaviddias/Front-End-Checklist, 74k stars) and Validate Plugin (ruvnet/ruflo, 74k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Ontology Validator?

FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 170 skills in this directory. The repository was last updated on July 21, 2026.

Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.