Release
chrisguidry/docket
How docket tags and publishes a release of pydocket or docket-rs - the tag formats, the docket-rs version bump that must merge first, the release-name format, the gh commands, and what to do when a…
Agent skill
Bio Fragment Analysis
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Analyzes cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin.
Install Bio Fragment Analysis
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-fragment-analysis -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-fragment-analysis --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-fragment-analysis .claude/skills/bio-fragment-analysis && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-fragment-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-fragment-analysis into .claude/skills/bio-fragment-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-fragment-analysis", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-fragment-analysisType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-fragment-analysis -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-fragment-analysis --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-fragment-analysis .agents/skills/bio-fragment-analysis && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-fragment-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-fragment-analysis into .agents/skills/bio-fragment-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-fragment-analysis", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-fragment-analysis -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-fragment-analysis --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-fragment-analysis .cursor/skills/bio-fragment-analysis && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-fragment-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-fragment-analysis into .cursor/skills/bio-fragment-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-fragment-analysis", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-fragment-analysis--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-fragment-analysis -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-fragment-analysis --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-fragment-analysis .gemini/skills/bio-fragment-analysis && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-fragment-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-fragment-analysis into .gemini/skills/bio-fragment-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-fragment-analysis", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-fragment-analysisInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-fragment-analysis -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-fragment-analysis .github/skills/bio-fragment-analysis && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-fragment-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-fragment-analysis into .github/skills/bio-fragment-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-fragment-analysis", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-fragment-analysis -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-fragment-analysis --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-fragment-analysis .opencode/skills/bio-fragment-analysis && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-fragment-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-fragment-analysis into .opencode/skills/bio-fragment-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-fragment-analysis", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-fragment-analysis- GitHub stars
- 3.1k
- Used in
- 1 other repo
- Token cost
- ~1.6k tokens
- SKILL.md length
- 248 words
- Files
- 3
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Analyzes cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin.
- Leveraging fragment patterns for tumor detection
- SKILL.md covers Version Compatibility, Tool Selection, Fragment Size Metrics and FinaleToolkit Analysis, plus 4 more sections
- Runs Python scripts from its folder; calls pip
- Tissue-of-origin analysis
What it does
Bio Fragment Analysis is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Analyzes cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin. Extracts nucleosome positioning patterns, fragment ratios, and DELFI-style fragmentation profiles for cancer detection. Use when leveraging fragment patterns for tumor detection or tissue-of-origin analysis.
Its SKILL.md is about 1.6k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/fragment_analysis.py` and `usage-guide.md`).
It sits in Marketing & SEO, covering Positioning and messaging. It works with Python. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Leveraging fragment patterns for tumor detection
- Tissue-of-origin analysis
Example prompts
- “Use the bio-fragment-analysis skill to analyz cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin”
- “/bio-fragment-analysis”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (Python), which the agent can run.
Shell commands in SKILL.md call:
pip
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Fragment Analysis loads about 1.6k tokens when it runs. Until then it costs about 83 tokens; SKILL.md has 248 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 248 words (~1,632 tokens).
“Reference examples tested with: numpy 1.26+, pandas 2.2+, pysam 0.22+”
- name
- bio-fragment-analysis
- tool_type
- python
- primary_tool
- FinaleToolkit
Files
SKILL.md and 2 other files in skills/bio-fragment-analysis of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/fragment_analysis.py
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Used in 1 other repository
We found 2 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Bio Fragment Analysis next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Fragment Analysis this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~1.6k | Automated safety check: Pass | None | |
| Releasechrisguidry/docket | 149 | — | ~1.4k | Automated safety check: Pass | Custom licence | |
| Yao Positioning Skillyaojingang/yao-open-skills | 1.3k | — | ~805 | Automated safety check: Pass | MIT | |
| Bio Atac Seq Nucleosome PositioningGPTomics/bioSkills | 1.2k | 2 repos | ~4.9k | Automated safety check: Pass | MIT | |
| Geo Site Diagnoseyaojingang/GEOHub | 165 | — | ~515 | Automated safety check: Pass | AGPL-3.0 | |
| Icp Research Assistantirinabuht12-oss/marketing-skills | 4k | — | ~1.8k | Automated safety check: Pass | None |
Similar skills
Yao Positioning Skill
yaojingang/yao-open-skills
Generate evidence-aware positioning reports for personal IPs, courses, products, services, brands, or companies by combining positioning theory, course-marketing analysis, user intent, competitor…
Bio Atac Seq Nucleosome Positioning
GPTomics/bioSkills
Map nucleosome center positions, occupancy, and fuzziness from ATAC-seq fragment-size patterns using NucleoATAC, ATACseqQC, DANPOS3, or scprinter.
Geo Site Diagnose
yaojingang/GEOHub
Crawl one public website from a supplied URL, select up to ten representative page types, score evidence-lined GEO readiness, and generate a standalone visual HTML report.
Icp Research Assistant
irinabuht12-oss/marketing-skills
Build detailed B2B buyer personas with pain points, objections, buying triggers, and messaging angles.
Geo Diagnose
yaojingang/GEOHub
Diagnose a brand, website, or page for evidence-backed GEO gaps and opportunities from user-supplied URLs, HTML, or evidence.
More from FreedomIntelligence/OpenClaw-Medical-Skills
All 279 skills in this repoSingle Cell Rna Qc
FreedomIntelligence/OpenClaw-Medical-Skills
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.
Differentiation Schemes
FreedomIntelligence/OpenClaw-Medical-Skills
Select and apply numerical differentiation schemes for PDE/ODE discretization.
Fhir Developer Skill
FreedomIntelligence/OpenClaw-Medical-Skills
FHIR API development guide for building healthcare endpoints.
Linear Solvers
FreedomIntelligence/OpenClaw-Medical-Skills
Select and configure linear solvers for systems Ax=b in dense and sparse problems.
Medical Research Toolkit
FreedomIntelligence/OpenClaw-Medical-Skills
Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research.
Mesh Generation
FreedomIntelligence/OpenClaw-Medical-Skills
Plan and evaluate mesh generation for numerical simulations.
Related
Works with
Categories
Questions about Bio Fragment Analysis
What does Bio Fragment Analysis do?
Analyzes cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin. Bio Fragment Analysis is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Analyzes cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin.
When should I use Bio Fragment Analysis?
Bio Fragment Analysis fits situations like: leveraging fragment patterns for tumor detection; tissue-of-origin analysis.
How do I install Bio Fragment Analysis in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-fragment-analysis -a claude-code`. Or copy the skill folder (skills/bio-fragment-analysis in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-fragment-analysis in your project. Claude Code loads it when a task matches its description.
How do I install Bio Fragment Analysis in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-fragment-analysis -a codex`. Or copy the skill folder (skills/bio-fragment-analysis in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-fragment-analysis in your project. Codex loads it when a task matches its description.
Can I use Bio Fragment Analysis in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-fragment-analysis -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-fragment-analysis, .gemini/skills/bio-fragment-analysis, .github/skills/bio-fragment-analysis and .opencode/skills/bio-fragment-analysis in your project.
What does Bio Fragment Analysis need to run?
Going by SKILL.md and its folder, Bio Fragment Analysis needs Python for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.
Does Bio Fragment Analysis access the network?
SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Is Bio Fragment Analysis safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Fragment Analysis use?
No licence was found for Bio Fragment Analysis or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Fragment Analysis use?
About 1.6k tokens (SKILL.md is roughly 6.5k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Fragment Analysis?
Skills that share tags, products or a category with Bio Fragment Analysis: Release (chrisguidry/docket, 149 stars), Yao Positioning Skill (yaojingang/yao-open-skills, 1.3k stars), Bio Atac Seq Nucleosome Positioning (GPTomics/bioSkills, 1.2k stars) and Geo Site Diagnose (yaojingang/GEOHub, 165 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Fragment Analysis?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.