Skill collection
FreedomIntelligence/OpenClaw-Medical-Skills agent skills, page 6
Skills in FreedomIntelligence/OpenClaw-Medical-Skills, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 241 | MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout) for pooled CRISPR screen analysis. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 242 | Quality control for pooled CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 243 | Detects differential alternative splicing between conditions using rMATS-turbo (BAM-based) or SUPPA2 diffSplice (TPM-based). | FreedomIntelligence/ | 3.1k | — | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 244 | Analyzes isoform switching events and functional consequences using IsoformSwitchAnalyzeR. | FreedomIntelligence/ | 3.1k | — | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 245 | Calculates molecular descriptors and fingerprints using RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 246 | 246.Bio Molecular Io Reads, writes, and converts molecular file formats (SMILES, SDF, MOL2, PDB) using RDKit and Open Babel. | FreedomIntelligence/ | 3.1k | — | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 247 | Enumerates chemical libraries through reaction SMARTS transformations using RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 248 | Creates sashimi plots showing RNA-seq read coverage and splice junction counts using ggsashimi or rmats2sashimiplot. | FreedomIntelligence/ | 3.1k | — | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 249 | Performs molecular similarity searches using Tanimoto coefficient on fingerprints via RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 250 | Analyzes alternative splicing at single-cell resolution using BRIE2 for probabilistic PSI estimation or leafcutter2 for cluster-based analysis with NMD detection. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 251 | 251.Bio Splicing Qc Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 252 | Quantifies alternative splicing events (PSI/percent spliced in) from RNA-seq using SUPPA2 from transcript TPM or rMATS-turbo from BAM files. | FreedomIntelligence/ | 3.1k | — | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 253 | Searches molecular libraries for substructure matches using SMARTS patterns with RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 254 | Call structural variants (SVs) from short-read sequencing using Manta, Delly, and LUMPY. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 255 | Normalize indel representation and split multiallelic variants using bcftools norm. | FreedomIntelligence/ | 3.1k | — | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 256 | Performs structure-based virtual screening using AutoDock Vina 1.2 for molecular docking. | FreedomIntelligence/ | 3.1k | — | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 257 | Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2. | FreedomIntelligence/ | 3.1k | — | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 258 | Detect transcription factor binding sites through footprinting analysis in ATAC-seq data using TOBIAS. | FreedomIntelligence/ | 3.1k | — | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 259 | Analyze transcription factor motif accessibility variability using chromVAR. | FreedomIntelligence/ | 3.1k | — | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 260 | Differential binding analysis using DiffBind. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 261 | De novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP. | FreedomIntelligence/ | 3.1k | — | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 262 | Annotate ChIP-seq peaks to genomic features and genes using ChIPseeker. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 263 | ChIP-seq peak calling using MACS3 (or MACS2). An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 264 | Query gnomAD for population allele frequencies to assess variant rarity. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 265 | Query myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request. | FreedomIntelligence/ | 3.1k | — | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 266 | Calculate tumor mutational burden from panel or WES data with proper normalization and clinical thresholds. | FreedomIntelligence/ | 3.1k | — | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 267 | Visualize copy number profiles, segments, and compare across samples. | FreedomIntelligence/ | 3.1k | — | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 268 | Call copy number variants using GATK best practices workflow. | FreedomIntelligence/ | 3.1k | — | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 269 | Analyzes base editing and prime editing outcomes including editing efficiency, bystander edits, and indel frequencies. | FreedomIntelligence/ | 3.1k | — | ~889 | Automated safety check: Pass | No licence | 2 mo ago |
| 270 | Batch effect correction for CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 271 | CRISPResso2 for analyzing CRISPR gene editing outcomes. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 272 | JACKS (Joint Analysis of CRISPR/Cas9 Knockout Screens) for modeling sgRNA efficacy and gene essentiality. | FreedomIntelligence/ | 3.1k | — | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 273 | CRISPR library design for genetic screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~3.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 274 | Statistical analysis for metabolomics data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 275 | Statistical testing for differentially abundant proteins between conditions. | FreedomIntelligence/ | 3.1k | — | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 276 | Generate daily or on-demand medical research briefs for any medical specialty. | FreedomIntelligence/ | 3.1k | — | ~798 | Automated safety check: Pass | No licence | 2 mo ago |
| 277 | Quick-reference sheet for OmicVerse tutorials spanning MOFA, GLUE pairing, SIMBA integration, TOSICA transfer, and StaVIA cartography. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 278 | Guide to reproducing OmicVerse trajectory workflows spanning PAGA, Palantir, VIA, velocity coupling, and fate scoring notebooks. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 279 | Local Scanpy pipeline for single-cell RNA-seq QC, clustering, marker discovery, and optional two-group differential expression from raw-count .h5ad. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | MIT | 2 mo ago |
