Tooluniverse Epigenomics
wu-yc/LabClaw
Production-ready genomics and epigenomics data processing for BixBench questions.
Agent skill
Bio Proteomics Differential Abundance
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Statistical testing for differentially abundant proteins between conditions.
Install Bio Proteomics Differential Abundance
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-proteomics-differential-abundance -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-proteomics-differential-abundance --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-proteomics-differential-abundance .claude/skills/bio-proteomics-differential-abundance && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-proteomics-differential-abundance" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-proteomics-differential-abundance into .claude/skills/bio-proteomics-differential-abundance/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-proteomics-differential-abundance", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-proteomics-differential-abundanceType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-proteomics-differential-abundance -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-proteomics-differential-abundance --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-proteomics-differential-abundance .agents/skills/bio-proteomics-differential-abundance && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-proteomics-differential-abundance" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-proteomics-differential-abundance into .agents/skills/bio-proteomics-differential-abundance/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-proteomics-differential-abundance", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-proteomics-differential-abundance -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-proteomics-differential-abundance --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-proteomics-differential-abundance .cursor/skills/bio-proteomics-differential-abundance && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-proteomics-differential-abundance" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-proteomics-differential-abundance into .cursor/skills/bio-proteomics-differential-abundance/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-proteomics-differential-abundance", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-proteomics-differential-abundance--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-proteomics-differential-abundance -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-proteomics-differential-abundance --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-proteomics-differential-abundance .gemini/skills/bio-proteomics-differential-abundance && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-proteomics-differential-abundance" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-proteomics-differential-abundance into .gemini/skills/bio-proteomics-differential-abundance/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-proteomics-differential-abundance", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-proteomics-differential-abundanceInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-proteomics-differential-abundance -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-proteomics-differential-abundance .github/skills/bio-proteomics-differential-abundance && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-proteomics-differential-abundance" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-proteomics-differential-abundance into .github/skills/bio-proteomics-differential-abundance/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-proteomics-differential-abundance", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-proteomics-differential-abundance -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-proteomics-differential-abundance --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-proteomics-differential-abundance .opencode/skills/bio-proteomics-differential-abundance && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-proteomics-differential-abundance" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-proteomics-differential-abundance into .opencode/skills/bio-proteomics-differential-abundance/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-proteomics-differential-abundance", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-proteomics-differential-abundance- GitHub stars
- 3.1k
- Token cost
- ~1.2k tokens
- SKILL.md length
- 201 words
- Files
- 3
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Statistical testing for differentially abundant proteins between conditions.
- Identifying proteins with significant abundance changes between experimental groups
- SKILL.md covers Version Compatibility, MSstats Group Comparison (R…, limma for Proteomics (R stats… and QFeatures/proDA (Modern…, plus 3 more sections
- Runs R scripts from its folder; calls pip
- Tasks that involve Bioinformatics
What it does
Bio Proteomics Differential Abundance is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Statistical testing for differentially abundant proteins between conditions. Covers limma and MSstats workflows with multiple testing correction. Use when identifying proteins with significant abundance changes between experimental groups.
Its SKILL.md is about 1.2k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `usage-guide.md`).
It sits in Research & Science, covering Bioinformatics and Statistics. It works with Python and statsmodels. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Identifying proteins with significant abundance changes between experimental groups
- Tasks that involve Bioinformatics
- Tasks that involve Statistics
Example prompts
- “/bio-proteomics-differential-abundance”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (R), which the agent can run.
Shell commands in SKILL.md call:
pip
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Proteomics Differential Abundance loads about 1.2k tokens when it runs. Until then it costs about 69 tokens; SKILL.md has 201 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 201 words (~1,220 tokens).
“Reference examples tested with: R stats (base), ggplot2 3.5+, limma 3.58+, numpy 1.26+, pandas 2.2+, scipy 1.12+, statsmodels 0.14+”
- name
- bio-proteomics-differential-abundance
- tool_type
- mixed
- primary_tool
- MSstats
Files
SKILL.md and 2 other files in skills/bio-proteomics-differential-abundance of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/limma_analysis.R
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Compare with similar skills
Bio Proteomics Differential Abundance next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Proteomics Differential Abundance this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | — | ~1.2k | Automated safety check: Pass | None | |
| Tooluniverse Epigenomicswu-yc/LabClaw | 1.1k | 2 repos | ~14k | Automated safety check: Pass | None | |
| Bio Temporal Genomics Temporal GrnGPTomics/bioSkills | 1.2k | 1 repos | ~5k | Automated safety check: Pass | MIT | |
| Bio Workflows Timecourse PipelineGPTomics/bioSkills | 1.2k | 1 repos | ~6k | Automated safety check: Pass | MIT | |
| Bio Experimental Design Multiple TestingGPTomics/bioSkills | 1.2k | 1 repos | ~3.5k | Automated safety check: Pass | MIT | |
| PyDESeq2 Differential Expressiondavila7/claude-code-templates | 33k | 11 repos | ~4k | Automated safety check: Pass | MIT |
Similar skills
Bio Temporal Genomics Temporal Grn
GPTomics/bioSkills
Infers directed, time-delayed gene regulatory edges from BULK time-series expression using Granger causality (statsmodels VAR F-test), dynGENIE3 (tree ensembles regressing ODE-derived derivatives…
Bio Workflows Timecourse Pipeline
GPTomics/bioSkills
End-to-end bulk time-course analysis from an expression matrix to temporal gene modules and per-cluster pathway enrichment.
Bio Experimental Design Multiple Testing
GPTomics/bioSkills
Controls error rates across thousands of simultaneous tests in genomics discovery using false-discovery-rate methods (Benjamini-Hochberg 1995; Benjamini-Yekutieli 2001 for arbitrary dependence…
PyDESeq2 Differential Expression
davila7/claude-code-templates
Runs differential gene expression analysis on bulk RNA-seq counts with PyDESeq2: design formulas, Wald tests, FDR correction and volcano or MA plots.
Volcano Plot Script
aipoch/medical-research-skills
Generate R/Python code for volcano plots from DEG (Differentially Expressed Genes) analysis results.
More from FreedomIntelligence/OpenClaw-Medical-Skills
All 279 skills in this repoSingle Cell Rna Qc
FreedomIntelligence/OpenClaw-Medical-Skills
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.
Differentiation Schemes
FreedomIntelligence/OpenClaw-Medical-Skills
Select and apply numerical differentiation schemes for PDE/ODE discretization.
Fhir Developer Skill
FreedomIntelligence/OpenClaw-Medical-Skills
FHIR API development guide for building healthcare endpoints.
Linear Solvers
FreedomIntelligence/OpenClaw-Medical-Skills
Select and configure linear solvers for systems Ax=b in dense and sparse problems.
Medical Research Toolkit
FreedomIntelligence/OpenClaw-Medical-Skills
Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research.
Mesh Generation
FreedomIntelligence/OpenClaw-Medical-Skills
Plan and evaluate mesh generation for numerical simulations.
Related
Works with
Categories
Questions about Bio Proteomics Differential Abundance
What does Bio Proteomics Differential Abundance do?
Statistical testing for differentially abundant proteins between conditions. Bio Proteomics Differential Abundance is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Statistical testing for differentially abundant proteins between conditions.
When should I use Bio Proteomics Differential Abundance?
Bio Proteomics Differential Abundance fits situations like: identifying proteins with significant abundance changes between experimental groups; tasks that involve Bioinformatics; tasks that involve Statistics.
How do I install Bio Proteomics Differential Abundance in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-proteomics-differential-abundance -a claude-code`. Or copy the skill folder (skills/bio-proteomics-differential-abundance in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-proteomics-differential-abundance in your project. Claude Code loads it when a task matches its description.
How do I install Bio Proteomics Differential Abundance in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-proteomics-differential-abundance -a codex`. Or copy the skill folder (skills/bio-proteomics-differential-abundance in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-proteomics-differential-abundance in your project. Codex loads it when a task matches its description.
Can I use Bio Proteomics Differential Abundance in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-proteomics-differential-abundance -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-proteomics-differential-abundance, .gemini/skills/bio-proteomics-differential-abundance, .github/skills/bio-proteomics-differential-abundance and .opencode/skills/bio-proteomics-differential-abundance in your project.
What does Bio Proteomics Differential Abundance need to run?
Going by SKILL.md and its folder, Bio Proteomics Differential Abundance needs R for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.
Does Bio Proteomics Differential Abundance access the network?
SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Is Bio Proteomics Differential Abundance safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Proteomics Differential Abundance use?
No licence was found for Bio Proteomics Differential Abundance or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Proteomics Differential Abundance use?
About 1.2k tokens (SKILL.md is roughly 4.9k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Proteomics Differential Abundance?
Skills that share tags, products or a category with Bio Proteomics Differential Abundance: Tooluniverse Epigenomics (wu-yc/LabClaw, 1.1k stars), Bio Temporal Genomics Temporal Grn (GPTomics/bioSkills, 1.2k stars), Bio Workflows Timecourse Pipeline (GPTomics/bioSkills, 1.2k stars) and Bio Experimental Design Multiple Testing (GPTomics/bioSkills, 1.2k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Proteomics Differential Abundance?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.