Bio Phylo Tree Visualization
GPTomics/bioSkills
Draw and export phylogenetic trees with Bio.Phylo plus matplotlib, and route rich figures to ggtree, ETE4, or iTOL.
Agent skill
Bio Copy Number Cnv Visualization
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Visualize copy number profiles, segments, and compare across samples.
Install Bio Copy Number Cnv Visualization
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-copy-number-cnv-visualization -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-copy-number-cnv-visualization --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-copy-number-cnv-visualization .claude/skills/bio-copy-number-cnv-visualization && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-copy-number-cnv-visualization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-copy-number-cnv-visualization into .claude/skills/bio-copy-number-cnv-visualization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-copy-number-cnv-visualization", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-copy-number-cnv-visualizationType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-copy-number-cnv-visualization -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-copy-number-cnv-visualization --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-copy-number-cnv-visualization .agents/skills/bio-copy-number-cnv-visualization && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-copy-number-cnv-visualization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-copy-number-cnv-visualization into .agents/skills/bio-copy-number-cnv-visualization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-copy-number-cnv-visualization", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-copy-number-cnv-visualization -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-copy-number-cnv-visualization --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-copy-number-cnv-visualization .cursor/skills/bio-copy-number-cnv-visualization && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-copy-number-cnv-visualization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-copy-number-cnv-visualization into .cursor/skills/bio-copy-number-cnv-visualization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-copy-number-cnv-visualization", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-copy-number-cnv-visualization--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-copy-number-cnv-visualization -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-copy-number-cnv-visualization --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-copy-number-cnv-visualization .gemini/skills/bio-copy-number-cnv-visualization && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-copy-number-cnv-visualization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-copy-number-cnv-visualization into .gemini/skills/bio-copy-number-cnv-visualization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-copy-number-cnv-visualization", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-copy-number-cnv-visualizationInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-copy-number-cnv-visualization -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-copy-number-cnv-visualization .github/skills/bio-copy-number-cnv-visualization && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-copy-number-cnv-visualization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-copy-number-cnv-visualization into .github/skills/bio-copy-number-cnv-visualization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-copy-number-cnv-visualization", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-copy-number-cnv-visualization -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-copy-number-cnv-visualization --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-copy-number-cnv-visualization .opencode/skills/bio-copy-number-cnv-visualization && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-copy-number-cnv-visualization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-copy-number-cnv-visualization into .opencode/skills/bio-copy-number-cnv-visualization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-copy-number-cnv-visualization", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-copy-number-cnv-visualization- GitHub stars
- 3.1k
- Token cost
- ~2.6k tokens
- SKILL.md length
- 326 words
- Files
- 3
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Visualize copy number profiles, segments, and compare across samples.
- Creating genome-wide CNV plots
- SKILL.md covers Version Compatibility, CNVkit Built-in Plots, Python: Genome-wide Profile and Python: Single Chromosome Plot, plus 5 more sections
- Runs Python scripts from its folder; calls pip
- Sample heatmaps
What it does
Bio Copy Number Cnv Visualization is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Visualize copy number profiles, segments, and compare across samples. Create publication-quality plots of CNV data from CNVkit, GATK, or other callers. Use when creating genome-wide CNV plots, sample heatmaps, or chromosome-level visualizations.
Its SKILL.md is about 2.6k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/plot_cnv.py` and `usage-guide.md`).
It sits in Data & Analytics, covering Bioinformatics and Data visualization. It works with Python and Matplotlib. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Creating genome-wide CNV plots
- Sample heatmaps
- Chromosome-level visualizations
Example prompts
- “/bio-copy-number-cnv-visualization”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (Python), which the agent can run.
Shell commands in SKILL.md call:
pip
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Copy Number Cnv Visualization loads about 2.6k tokens when it runs. Until then it costs about 70 tokens; SKILL.md has 326 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 326 words (~2,551 tokens).
“Reference examples tested with: GATK 4.5+, ggplot2 3.5+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, seaborn 0.13+”
- name
- bio-copy-number-cnv-visualization
- tool_type
- mixed
- primary_tool
- matplotlib
Files
SKILL.md and 2 other files in skills/bio-copy-number-cnv-visualization of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/plot_cnv.py
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Compare with similar skills
Bio Copy Number Cnv Visualization next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Copy Number Cnv Visualization this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | — | ~2.6k | Automated safety check: Pass | None | |
| Bio Phylo Tree VisualizationGPTomics/bioSkills | 1.2k | 1 repos | ~5.2k | Automated safety check: Pass | MIT | |
| Scientific Figure MakingChenLiu-1996/figures4papers | 8.3k | — | ~557 | Automated safety check: Pass | Custom licence | |
| FigMirrorVILA-Lab/FigMirror | 523 | — | ~2.4k | Automated safety check: Pass | None | |
| Agent Figure GalleryDsadd4/AgentFigureGallery | 163 | — | ~643 | Automated safety check: Pass | MIT | |
| Scientific Figure Generationlingzhi227/agent-research-skills | 386 | — | ~809 | Automated safety check: Pass | None |
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Related
Works with
Categories
Questions about Bio Copy Number Cnv Visualization
What does Bio Copy Number Cnv Visualization do?
Visualize copy number profiles, segments, and compare across samples. Bio Copy Number Cnv Visualization is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Visualize copy number profiles, segments, and compare across samples.
When should I use Bio Copy Number Cnv Visualization?
Bio Copy Number Cnv Visualization fits situations like: creating genome-wide CNV plots; sample heatmaps; chromosome-level visualizations.
How do I install Bio Copy Number Cnv Visualization in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-copy-number-cnv-visualization -a claude-code`. Or copy the skill folder (skills/bio-copy-number-cnv-visualization in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-copy-number-cnv-visualization in your project. Claude Code loads it when a task matches its description.
How do I install Bio Copy Number Cnv Visualization in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-copy-number-cnv-visualization -a codex`. Or copy the skill folder (skills/bio-copy-number-cnv-visualization in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-copy-number-cnv-visualization in your project. Codex loads it when a task matches its description.
Can I use Bio Copy Number Cnv Visualization in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-copy-number-cnv-visualization -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-copy-number-cnv-visualization, .gemini/skills/bio-copy-number-cnv-visualization, .github/skills/bio-copy-number-cnv-visualization and .opencode/skills/bio-copy-number-cnv-visualization in your project.
What does Bio Copy Number Cnv Visualization need to run?
Going by SKILL.md and its folder, Bio Copy Number Cnv Visualization needs Python for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.
Does Bio Copy Number Cnv Visualization access the network?
SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Is Bio Copy Number Cnv Visualization safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Copy Number Cnv Visualization use?
No licence was found for Bio Copy Number Cnv Visualization or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Copy Number Cnv Visualization use?
About 2.6k tokens (SKILL.md is roughly 10k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Copy Number Cnv Visualization?
Skills that share tags, products or a category with Bio Copy Number Cnv Visualization: Bio Phylo Tree Visualization (GPTomics/bioSkills, 1.2k stars), Scientific Figure Making (ChenLiu-1996/figures4papers, 8.3k stars), FigMirror (VILA-Lab/FigMirror, 523 stars) and Agent Figure Gallery (Dsadd4/AgentFigureGallery, 163 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Copy Number Cnv Visualization?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.