Bio Atac Seq Allele Specific Accessibility
GPTomics/bioSkills
Detect allele-specific chromatin accessibility from ATAC-seq using WASP, GATK ASEReadCounter, or RASQUAL.
Agent skill
Bio Atac Seq Differential Accessibility
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2.
Install Bio Atac Seq Differential Accessibility
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-atac-seq-differential-accessibility -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-atac-seq-differential-accessibility --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-atac-seq-differential-accessibility .claude/skills/bio-atac-seq-differential-accessibility && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-atac-seq-differential-accessibility" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-atac-seq-differential-accessibility into .claude/skills/bio-atac-seq-differential-accessibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-atac-seq-differential-accessibility", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-atac-seq-differential-accessibilityType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-atac-seq-differential-accessibility -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-atac-seq-differential-accessibility --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-atac-seq-differential-accessibility .agents/skills/bio-atac-seq-differential-accessibility && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-atac-seq-differential-accessibility" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-atac-seq-differential-accessibility into .agents/skills/bio-atac-seq-differential-accessibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-atac-seq-differential-accessibility", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-atac-seq-differential-accessibility -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-atac-seq-differential-accessibility --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-atac-seq-differential-accessibility .cursor/skills/bio-atac-seq-differential-accessibility && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-atac-seq-differential-accessibility" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-atac-seq-differential-accessibility into .cursor/skills/bio-atac-seq-differential-accessibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-atac-seq-differential-accessibility", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-atac-seq-differential-accessibility--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-atac-seq-differential-accessibility -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-atac-seq-differential-accessibility --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-atac-seq-differential-accessibility .gemini/skills/bio-atac-seq-differential-accessibility && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-atac-seq-differential-accessibility" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-atac-seq-differential-accessibility into .gemini/skills/bio-atac-seq-differential-accessibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-atac-seq-differential-accessibility", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-atac-seq-differential-accessibilityInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-atac-seq-differential-accessibility -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-atac-seq-differential-accessibility .github/skills/bio-atac-seq-differential-accessibility && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-atac-seq-differential-accessibility" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-atac-seq-differential-accessibility into .github/skills/bio-atac-seq-differential-accessibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-atac-seq-differential-accessibility", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-atac-seq-differential-accessibility -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-atac-seq-differential-accessibility --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-atac-seq-differential-accessibility .opencode/skills/bio-atac-seq-differential-accessibility && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-atac-seq-differential-accessibility" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-atac-seq-differential-accessibility into .opencode/skills/bio-atac-seq-differential-accessibility/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-atac-seq-differential-accessibility", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-atac-seq-differential-accessibility- GitHub stars
- 3.1k
- Token cost
- ~1.8k tokens
- SKILL.md length
- 279 words
- Files
- 3
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2.
- Comparing chromatin accessibility between treatment groups
- SKILL.md covers Version Compatibility, DiffBind Workflow, DiffBind with Consensus Peaks and DiffBind Visualizations, plus 7 more sections
- Runs R scripts from its folder; calls pip
- Developmental stages in ATAC-seq experiments
What it does
Bio Atac Seq Differential Accessibility is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2. Use when comparing chromatin accessibility between treatment groups, cell types, or developmental stages in ATAC-seq experiments.
Its SKILL.md is about 1.8k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `usage-guide.md`).
It sits in Frontend & Design, covering Bioinformatics and Accessibility. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Comparing chromatin accessibility between treatment groups
- Developmental stages in ATAC-seq experiments
Example prompts
- “/bio-atac-seq-differential-accessibility”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (R), which the agent can run.
Shell commands in SKILL.md call:
pip
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Atac Seq Differential Accessibility loads about 1.8k tokens when it runs. Until then it costs about 66 tokens; SKILL.md has 279 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 279 words (~1,842 tokens).
“Reference examples tested with: DESeq2 1.42+, GenomicRanges 1.54+, Subread 2.0+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, scipy 1.12+”
- name
- bio-atac-seq-differential-accessibility
- tool_type
- r
- primary_tool
- DiffBind
Files
SKILL.md and 2 other files in skills/bio-atac-seq-differential-accessibility of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/diff_accessibility.R
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Compare with similar skills
Bio Atac Seq Differential Accessibility next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Atac Seq Differential Accessibility this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | — | ~1.8k | Automated safety check: Pass | None | |
| Bio Atac Seq Allele Specific AccessibilityGPTomics/bioSkills | 1.2k | 2 repos | ~4.3k | Automated safety check: Pass | MIT | |
| Bio Atac Seq Differential AccessibilityGPTomics/bioSkills | 1.2k | 2 repos | ~6k | Automated safety check: Pass | MIT | |
| Bio Workflows Atacseq PipelineGPTomics/bioSkills | 1.2k | 1 repos | ~4.1k | Automated safety check: Pass | MIT | |
| Bio Atac Seq Co AccessibilityGPTomics/bioSkills | 1.2k | 2 repos | ~4.6k | Automated safety check: Pass | MIT | |
| Bio Atac Seq Motif DeviationGPTomics/bioSkills | 1.2k | 2 repos | ~5.2k | Automated safety check: Pass | MIT |
Similar skills
Bio Atac Seq Differential Accessibility
GPTomics/bioSkills
Identify differentially accessible chromatin regions across conditions using DiffBind, csaw, DESeq2, or edgeR.
Bio Workflows Atacseq Pipeline
GPTomics/bioSkills
Orchestrates the end-to-end bulk ATAC-seq pipeline from FASTQ to differential accessibility and TF footprints, chaining Nextera-aware fastp QC, Bowtie2 alignment, chrM removal, dedup, a single Tn5…
Bio Atac Seq Co Accessibility
GPTomics/bioSkills
Infer cis-regulatory connections (peak-to-peak co-accessibility) from scATAC-seq using Cicero, ArchR getCoAccessibility, or SCENIC+.
Bio Atac Seq Motif Deviation
GPTomics/bioSkills
Analyze TF motif accessibility variability across samples or single cells using chromVAR.
Bio Fragment Analysis
GPTomics/bioSkills
Extracts cfDNA fragmentomics features (DELFI genome-wide short/long ratios, WPS nucleosome positioning, Griffin GC-corrected accessibility profiles, end-motifs/MDS, OCF) for cancer detection and…
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Related
Categories
Questions about Bio Atac Seq Differential Accessibility
What does Bio Atac Seq Differential Accessibility do?
Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2. Bio Atac Seq Differential Accessibility is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2.
When should I use Bio Atac Seq Differential Accessibility?
Bio Atac Seq Differential Accessibility fits situations like: comparing chromatin accessibility between treatment groups; developmental stages in ATAC-seq experiments.
How do I install Bio Atac Seq Differential Accessibility in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-atac-seq-differential-accessibility -a claude-code`. Or copy the skill folder (skills/bio-atac-seq-differential-accessibility in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-atac-seq-differential-accessibility in your project. Claude Code loads it when a task matches its description.
How do I install Bio Atac Seq Differential Accessibility in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-atac-seq-differential-accessibility -a codex`. Or copy the skill folder (skills/bio-atac-seq-differential-accessibility in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-atac-seq-differential-accessibility in your project. Codex loads it when a task matches its description.
Can I use Bio Atac Seq Differential Accessibility in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-atac-seq-differential-accessibility -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-atac-seq-differential-accessibility, .gemini/skills/bio-atac-seq-differential-accessibility, .github/skills/bio-atac-seq-differential-accessibility and .opencode/skills/bio-atac-seq-differential-accessibility in your project.
What does Bio Atac Seq Differential Accessibility need to run?
Going by SKILL.md and its folder, Bio Atac Seq Differential Accessibility needs R for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.
Does Bio Atac Seq Differential Accessibility access the network?
SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Is Bio Atac Seq Differential Accessibility safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Atac Seq Differential Accessibility use?
No licence was found for Bio Atac Seq Differential Accessibility or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Atac Seq Differential Accessibility use?
About 1.8k tokens (SKILL.md is roughly 7.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Atac Seq Differential Accessibility?
Skills that share tags, products or a category with Bio Atac Seq Differential Accessibility: Bio Atac Seq Allele Specific Accessibility (GPTomics/bioSkills, 1.2k stars), Bio Atac Seq Differential Accessibility (GPTomics/bioSkills, 1.2k stars), Bio Workflows Atacseq Pipeline (GPTomics/bioSkills, 1.2k stars) and Bio Atac Seq Co Accessibility (GPTomics/bioSkills, 1.2k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Atac Seq Differential Accessibility?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.