ADMET Prediction for Drug Candidates
GPTomics/bioSkills
Predicts absorption, distribution, metabolism, excretion and toxicity for drug candidates with ADMETlab 3.0, ADMET-AI, DeepChem and chemprop, plus druglikeness filters.
Agent skill
Bio Molecular Descriptors
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Calculates molecular descriptors and fingerprints using RDKit.
Install Bio Molecular Descriptors
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-molecular-descriptors -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-molecular-descriptors --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-molecular-descriptors .claude/skills/bio-molecular-descriptors && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-molecular-descriptors" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-molecular-descriptors into .claude/skills/bio-molecular-descriptors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-molecular-descriptors", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-molecular-descriptorsType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-molecular-descriptors -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-molecular-descriptors --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-molecular-descriptors .agents/skills/bio-molecular-descriptors && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-molecular-descriptors" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-molecular-descriptors into .agents/skills/bio-molecular-descriptors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-molecular-descriptors", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-molecular-descriptors -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-molecular-descriptors --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-molecular-descriptors .cursor/skills/bio-molecular-descriptors && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-molecular-descriptors" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-molecular-descriptors into .cursor/skills/bio-molecular-descriptors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-molecular-descriptors", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-molecular-descriptors--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-molecular-descriptors -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-molecular-descriptors --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-molecular-descriptors .gemini/skills/bio-molecular-descriptors && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-molecular-descriptors" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-molecular-descriptors into .gemini/skills/bio-molecular-descriptors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-molecular-descriptors", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-molecular-descriptorsInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-molecular-descriptors -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-molecular-descriptors .github/skills/bio-molecular-descriptors && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-molecular-descriptors" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-molecular-descriptors into .github/skills/bio-molecular-descriptors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-molecular-descriptors", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-molecular-descriptors -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-molecular-descriptors --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-molecular-descriptors .opencode/skills/bio-molecular-descriptors && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-molecular-descriptors" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-molecular-descriptors into .opencode/skills/bio-molecular-descriptors/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-molecular-descriptors", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-molecular-descriptors- GitHub stars
- 3.1k
- Token cost
- ~1.6k tokens
- SKILL.md length
- 264 words
- Files
- 3
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Calculates molecular descriptors and fingerprints using RDKit.
- Featurizing molecules for machine learning
- SKILL.md covers Version Compatibility, Morgan Fingerprints (ECFP), MACCS Keys and Lipinski Properties, plus 5 more sections
- Runs Python scripts from its folder; calls pip
- Filtering by drug-likeness criteria
What it does
Bio Molecular Descriptors is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Calculates molecular descriptors and fingerprints using RDKit. Computes Morgan fingerprints (ECFP), MACCS keys, Lipinski properties, QED drug-likeness, TPSA, and 3D conformer descriptors. Use when featurizing molecules for machine learning or filtering by drug-likeness criteria.
Its SKILL.md is about 1.6k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/calculate_descriptors.py` and `usage-guide.md`).
It sits in Research & Science, covering Drug discovery and cheminformatics and Machine learning. It works with RDKit. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Featurizing molecules for machine learning
- Filtering by drug-likeness criteria
Example prompts
- “Use the bio-molecular-descriptors skill to calculate molecular descriptors and fingerprints using RDKit”
- “/bio-molecular-descriptors”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (Python), which the agent can run.
Shell commands in SKILL.md call:
pip
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Molecular Descriptors loads about 1.6k tokens when it runs. Until then it costs about 76 tokens; SKILL.md has 264 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 264 words (~1,586 tokens).
“Reference examples tested with: RDKit 2024.03+, numpy 1.26+, pandas 2.2+”
- name
- bio-molecular-descriptors
- tool_type
- python
- primary_tool
- RDKit
Files
SKILL.md and 2 other files in skills/bio-molecular-descriptors of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/calculate_descriptors.py
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Compare with similar skills
Bio Molecular Descriptors next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Molecular Descriptors this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | — | ~1.6k | Automated safety check: Pass | None | |
| ADMET Prediction for Drug CandidatesGPTomics/bioSkills | 1.2k | 1 repos | ~5k | Automated safety check: Pass | MIT | |
| Unimoljinzhezenggroup/computational-chemistry-agent-skills | 148 | — | ~1.5k | Automated safety check: Pass | LGPL-3.0-or-later | |
| Deepchemdavila7/claude-code-templates | 32k | 10 repos | ~4.4k | Automated safety check: Pass | MIT | |
| RDKit Descriptors and Fingerprintsjinzhezenggroup/computational-chemistry-agent-skills | 148 | — | ~2.3k | Automated safety check: Pass | LGPL-3.0 | |
| Bio Qsar ModelingGPTomics/bioSkills | 1.2k | 2 repos | ~5.5k | Automated safety check: Pass | MIT |
Similar skills
Unimol
jinzhezenggroup/computational-chemistry-agent-skills
A standardized CLI wrapper for Uni-Mol molecular ML workflows that handles representation extraction (embeddings), model training (regression/classification), and property prediction with built-in…
Deepchem
davila7/claude-code-templates
Molecular machine learning toolkit. An agent skill from davila7/claude-code-templates.
RDKit Descriptors and Fingerprints
jinzhezenggroup/computational-chemistry-agent-skills
Computes RDKit physicochemical descriptors and molecular fingerprints from SMILES through a uv-run CLI script that skips and logs invalid molecules.
Bio Qsar Modeling
GPTomics/bioSkills
Builds QSAR / QSPR models using chemprop D-MPNN, MolFormer, Uni-Mol, ChemBERTa, random forest baselines, and Gaussian processes with explicit handling of OECD 5 principles, applicability domain…
Molfeat
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Molecular ML featurization library (100+ featurizers: ECFP, descriptors, ChemBERTa).
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Related
Works with
Categories
Questions about Bio Molecular Descriptors
What does Bio Molecular Descriptors do?
Calculates molecular descriptors and fingerprints using RDKit. Bio Molecular Descriptors is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Calculates molecular descriptors and fingerprints using RDKit.
When should I use Bio Molecular Descriptors?
Bio Molecular Descriptors fits situations like: featurizing molecules for machine learning; filtering by drug-likeness criteria.
How do I install Bio Molecular Descriptors in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-molecular-descriptors -a claude-code`. Or copy the skill folder (skills/bio-molecular-descriptors in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-molecular-descriptors in your project. Claude Code loads it when a task matches its description.
How do I install Bio Molecular Descriptors in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-molecular-descriptors -a codex`. Or copy the skill folder (skills/bio-molecular-descriptors in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-molecular-descriptors in your project. Codex loads it when a task matches its description.
Can I use Bio Molecular Descriptors in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-molecular-descriptors -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-molecular-descriptors, .gemini/skills/bio-molecular-descriptors, .github/skills/bio-molecular-descriptors and .opencode/skills/bio-molecular-descriptors in your project.
What does Bio Molecular Descriptors need to run?
Going by SKILL.md and its folder, Bio Molecular Descriptors needs Python for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.
Does Bio Molecular Descriptors access the network?
SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Is Bio Molecular Descriptors safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Molecular Descriptors use?
No licence was found for Bio Molecular Descriptors or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Molecular Descriptors use?
About 1.6k tokens (SKILL.md is roughly 6.3k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Molecular Descriptors?
Skills that share tags, products or a category with Bio Molecular Descriptors: ADMET Prediction for Drug Candidates (GPTomics/bioSkills, 1.2k stars), Unimol (jinzhezenggroup/computational-chemistry-agent-skills, 148 stars), Deepchem (davila7/claude-code-templates, 32k stars) and RDKit Descriptors and Fingerprints (jinzhezenggroup/computational-chemistry-agent-skills, 148 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Molecular Descriptors?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.