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Agent skill

Bio Crispr Screens Screen Qc

by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills

Quality control for pooled CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills.

No licenceAuto-check passedResearch & Science

Install Bio Crispr Screens Screen Qc

skills CLI
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-crispr-screens-screen-qc -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-crispr-screens-screen-qc --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-crispr-screens-screen-qc .claude/skills/bio-crispr-screens-screen-qc && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
bio-crispr-screens-screen-qc
GitHub stars
3.1k
Token cost
~2.1k tokens
SKILL.md length
307 words
Files
3
Skills in repo
279
Repo updated
First seen
Licence
None found

At a glance

Quality control for pooled CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills.

  • Assessing screen quality before hit calling
  • SKILL.md covers Version Compatibility, Load Count Data, Library Representation and Read Distribution (Gini Index), plus 7 more sections
  • Runs Python scripts from its folder; calls pip
  • Diagnosing poor screen performance

What it does

Bio Crispr Screens Screen Qc is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Quality control for pooled CRISPR screens. Covers library representation, read distribution, replicate correlation, and essential gene recovery. Use when assessing screen quality before hit calling or diagnosing poor screen performance.

Its SKILL.md is about 2.1k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/screen_qc.py` and `usage-guide.md`).

It sits in Research & Science, covering Bioinformatics. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.

When your agent uses it

  • Assessing screen quality before hit calling
  • Diagnosing poor screen performance

Example prompts

  • “/bio-crispr-screens-screen-qc”

Requirements

  • Python 3

What it can do on your machine

Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships script files (Python), which the agent can run.

    Shell commands in SKILL.md call:

    • pip

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Bio Crispr Screens Screen Qc loads about 2.1k tokens when it runs. Until then it costs about 66 tokens; SKILL.md has 307 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~66
When it runs · the whole SKILL.md, loaded when a task matches
~2.1k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 307 words (~2,097 tokens).

“Reference examples tested with: MAGeCK 0.5+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scikit-learn 1.4+, seaborn 0.13+”

— opening of SKILL.md by FreedomIntelligence
name
bio-crispr-screens-screen-qc
tool_type
python
primary_tool
pandas

Read the full SKILL.md on GitHub

Files

SKILL.md and 2 other files in skills/bio-crispr-screens-screen-qc of FreedomIntelligence/OpenClaw-Medical-Skills.

  • SKILL.md
  • examples/screen_qc.py
  • usage-guide.md

Open the folder on GitHubat commit b1f9b6e

Compare with similar skills

Bio Crispr Screens Screen Qc next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Bio Crispr Screens Screen Qc compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Bio Crispr Screens Screen Qc this skillFreedomIntelligence/OpenClaw-Medical-Skills3.1k—~2.1kAutomated safety check: PassNone
Scanpy Single-Cell Analysisdavila7/claude-code-templates33k15 repos~2.8kAutomated safety check: PassMIT
Bulkrna Cosinor RhythmTianGzlab/OmicsClaw161—~840Automated safety check: PassApache-2.0
deepTools NGS Toolkitdavila7/claude-code-templates33k12 repos~4.5kAutomated safety check: PassMIT
LaminDB Biological Data Managementdavila7/claude-code-templates33k12 repos~3.6kAutomated safety check: PassMIT
PyDESeq2 Differential Expressiondavila7/claude-code-templates33k11 repos~4kAutomated safety check: PassMIT

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Categories

Questions about Bio Crispr Screens Screen Qc

What does Bio Crispr Screens Screen Qc do?

Quality control for pooled CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Bio Crispr Screens Screen Qc is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Quality control for pooled CRISPR screens.

When should I use Bio Crispr Screens Screen Qc?

Bio Crispr Screens Screen Qc fits situations like: assessing screen quality before hit calling; diagnosing poor screen performance.

How do I install Bio Crispr Screens Screen Qc in Claude Code?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-crispr-screens-screen-qc -a claude-code`. Or copy the skill folder (skills/bio-crispr-screens-screen-qc in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-crispr-screens-screen-qc in your project. Claude Code loads it when a task matches its description.

How do I install Bio Crispr Screens Screen Qc in Codex?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-crispr-screens-screen-qc -a codex`. Or copy the skill folder (skills/bio-crispr-screens-screen-qc in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-crispr-screens-screen-qc in your project. Codex loads it when a task matches its description.

Can I use Bio Crispr Screens Screen Qc in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-crispr-screens-screen-qc -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-crispr-screens-screen-qc, .gemini/skills/bio-crispr-screens-screen-qc, .github/skills/bio-crispr-screens-screen-qc and .opencode/skills/bio-crispr-screens-screen-qc in your project.

What does Bio Crispr Screens Screen Qc need to run?

Going by SKILL.md and its folder, Bio Crispr Screens Screen Qc needs Python for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.

Does Bio Crispr Screens Screen Qc access the network?

SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.

Is Bio Crispr Screens Screen Qc safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Bio Crispr Screens Screen Qc use?

No licence was found for Bio Crispr Screens Screen Qc or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Bio Crispr Screens Screen Qc use?

About 2.1k tokens (SKILL.md is roughly 8.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Bio Crispr Screens Screen Qc?

Skills that share tags, products or a category with Bio Crispr Screens Screen Qc: Scanpy Single-Cell Analysis (davila7/claude-code-templates, 33k stars), Bulkrna Cosinor Rhythm (TianGzlab/OmicsClaw, 161 stars), deepTools NGS Toolkit (davila7/claude-code-templates, 33k stars) and LaminDB Biological Data Management (davila7/claude-code-templates, 33k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Bio Crispr Screens Screen Qc?

FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.

Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.