Bio Batch Processing
GPTomics/bioSkills
Process many sequence files in batch (count, merge, split, convert, summarize) with memory-safe streaming and on-disk indexing using Biopython, pysam, or pyfastx.
Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC.
Install Bio Splicing Qc
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-splicing-qc -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-splicing-qc --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-splicing-qc .claude/skills/bio-splicing-qc && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-splicing-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-splicing-qc into .claude/skills/bio-splicing-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-splicing-qc", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-splicing-qcType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-splicing-qc -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-splicing-qc --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-splicing-qc .agents/skills/bio-splicing-qc && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-splicing-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-splicing-qc into .agents/skills/bio-splicing-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-splicing-qc", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-splicing-qc -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-splicing-qc --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-splicing-qc .cursor/skills/bio-splicing-qc && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-splicing-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-splicing-qc into .cursor/skills/bio-splicing-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-splicing-qc", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-splicing-qc--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-splicing-qc -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-splicing-qc --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-splicing-qc .gemini/skills/bio-splicing-qc && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-splicing-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-splicing-qc into .gemini/skills/bio-splicing-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-splicing-qc", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-splicing-qcInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-splicing-qc -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-splicing-qc .github/skills/bio-splicing-qc && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-splicing-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-splicing-qc into .github/skills/bio-splicing-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-splicing-qc", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-splicing-qc -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-splicing-qc --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-splicing-qc .opencode/skills/bio-splicing-qc && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-splicing-qc" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-splicing-qc into .opencode/skills/bio-splicing-qc/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-splicing-qc", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-splicing-qc- GitHub stars
- 3.1k
- Token cost
- ~1.6k tokens
- SKILL.md length
- 335 words
- Files
- 3
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC.
- Evaluating data suitability for splicing analysis
- SKILL.md covers Version Compatibility, Junction Saturation Analysis, Junction Annotation and Splice Site Strength Scoring, plus 4 more sections
- Runs Python scripts from its folder; calls pip
- Troubleshooting low event detection
What it does
Bio Splicing Qc is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. Use when evaluating data suitability for splicing analysis or troubleshooting low event detection.
Its SKILL.md is about 1.6k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/splicing_qc.py` and `usage-guide.md`).
It sits in Data & Analytics, covering Bioinformatics and Data cleaning. It works with Python and pysam. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Evaluating data suitability for splicing analysis
- Troubleshooting low event detection
Example prompts
- “Use the bio-splicing-qc skill to assess RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength…”
- “/bio-splicing-qc”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (Python), which the agent can run.
Shell commands in SKILL.md call:
pip
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Splicing Qc loads about 1.6k tokens when it runs. Until then it costs about 69 tokens; SKILL.md has 335 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 335 words (~1,602 tokens).
“Reference examples tested with: matplotlib 3.8+, pandas 2.2+, pysam 0.22+”
- name
- bio-splicing-qc
- tool_type
- python
- primary_tool
- RSeQC
Files
SKILL.md and 2 other files in skills/bio-splicing-qc of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/splicing_qc.py
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Compare with similar skills
Bio Splicing Qc next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Splicing Qc this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | — | ~1.6k | Automated safety check: Pass | None | |
| Bio Batch ProcessingGPTomics/bioSkills | 1.2k | 1 repos | ~3k | Automated safety check: Pass | MIT | |
| Bio Proteomics Differential AbundanceGPTomics/bioSkills | 1.2k | 1 repos | ~5.7k | Automated safety check: Pass | MIT | |
| Bio Alignment ValidationGPTomics/bioSkills | 1.2k | 2 repos | ~3.7k | Automated safety check: Pass | MIT | |
| Tooluniverse Epigenomicswu-yc/LabClaw | 1.1k | 2 repos | ~14k | Automated safety check: Pass | None | |
| Authoritative Data Harvesteryushui2022/MathModel-Skill | 453 | 1 repos | ~1.1k | Automated safety check: Pass | MIT |
Similar skills
Bio Proteomics Differential Abundance
GPTomics/bioSkills
Tests for differentially abundant proteins between conditions with limma/DEqMS empirical-Bayes moderation, proDA/msqrob2/MSstats missingness modeling, and Python Welch+BH alternatives.
Bio Alignment Validation
GPTomics/bioSkills
Validate alignment quality with insert size distribution, proper pairing rates, GC bias, strand balance, and other post-alignment metrics.
Tooluniverse Epigenomics
wu-yc/LabClaw
Production-ready genomics and epigenomics data processing for BixBench questions.
Authoritative Data Harvester
yushui2022/MathModel-Skill
Finds authoritative public data sources for modeling tasks, prefers official APIs and bulk downloads, and outputs a reproducible fetch and cleaning plan with citations.
Pyopenms
davila7/claude-code-templates
Python interface to OpenMS for mass spectrometry data analysis.
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Related
Categories
Questions about Bio Splicing Qc
What does Bio Splicing Qc do?
Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. Bio Splicing Qc is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC.
When should I use Bio Splicing Qc?
Bio Splicing Qc fits situations like: evaluating data suitability for splicing analysis; troubleshooting low event detection.
How do I install Bio Splicing Qc in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-splicing-qc -a claude-code`. Or copy the skill folder (skills/bio-splicing-qc in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-splicing-qc in your project. Claude Code loads it when a task matches its description.
How do I install Bio Splicing Qc in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-splicing-qc -a codex`. Or copy the skill folder (skills/bio-splicing-qc in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-splicing-qc in your project. Codex loads it when a task matches its description.
Can I use Bio Splicing Qc in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-splicing-qc -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-splicing-qc, .gemini/skills/bio-splicing-qc, .github/skills/bio-splicing-qc and .opencode/skills/bio-splicing-qc in your project.
What does Bio Splicing Qc need to run?
Going by SKILL.md and its folder, Bio Splicing Qc needs Python for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.
Does Bio Splicing Qc access the network?
SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Is Bio Splicing Qc safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Splicing Qc use?
No licence was found for Bio Splicing Qc or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Splicing Qc use?
About 1.6k tokens (SKILL.md is roughly 6.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Splicing Qc?
Skills that share tags, products or a category with Bio Splicing Qc: Bio Batch Processing (GPTomics/bioSkills, 1.2k stars), Bio Proteomics Differential Abundance (GPTomics/bioSkills, 1.2k stars), Bio Alignment Validation (GPTomics/bioSkills, 1.2k stars) and Tooluniverse Epigenomics (wu-yc/LabClaw, 1.1k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Splicing Qc?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.