Agent skill
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Guide to reproducing OmicVerse trajectory workflows spanning PAGA, Palantir, VIA, velocity coupling, and fate scoring notebooks.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill single-trajectory-analysis -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills single-trajectory-analysis --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/single-trajectory .claude/skills/single-trajectory-analysis && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "single-trajectory-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/single-trajectory into .claude/skills/single-trajectory-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "single-trajectory-analysis", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/single-trajectoryType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill single-trajectory-analysis -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills single-trajectory-analysis --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/single-trajectory .agents/skills/single-trajectory-analysis && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "single-trajectory-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/single-trajectory into .agents/skills/single-trajectory-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "single-trajectory-analysis", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill single-trajectory-analysis -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills single-trajectory-analysis --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/single-trajectory .cursor/skills/single-trajectory-analysis && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "single-trajectory-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/single-trajectory into .cursor/skills/single-trajectory-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "single-trajectory-analysis", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/single-trajectory--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill single-trajectory-analysis -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills single-trajectory-analysis --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/single-trajectory .gemini/skills/single-trajectory-analysis && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "single-trajectory-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/single-trajectory into .gemini/skills/single-trajectory-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "single-trajectory-analysis", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills single-trajectory-analysisInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill single-trajectory-analysis -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/single-trajectory .github/skills/single-trajectory-analysis && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "single-trajectory-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/single-trajectory into .github/skills/single-trajectory-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "single-trajectory-analysis", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill single-trajectory-analysis -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills single-trajectory-analysis --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/single-trajectory .opencode/skills/single-trajectory-analysis && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "single-trajectory-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/single-trajectory into .opencode/skills/single-trajectory-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "single-trajectory-analysis", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
single-trajectory-analysisGuide to reproducing OmicVerse trajectory workflows spanning PAGA, Palantir, VIA, velocity coupling, and fate scoring notebooks.
Single Trajectory Analysis is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Guide to reproducing OmicVerse trajectory workflows spanning PAGA, Palantir, VIA, velocity coupling, and fate scoring notebooks.
Its SKILL.md is about 1.1k tokens, which your agent loads only when the skill is triggered. The skill folder holds 1 other file (for example `reference.md`).
It sits in Data & Analytics. It works with Jupyter. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
6 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Single Trajectory Analysis loads about 1.1k tokens when it runs. Until then it costs about 39 tokens; SKILL.md has 481 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
Without a licence we can't republish the file, so here is its outline and opening line. It has 481 words (~1,101 tokens).
“This skill describes how to reproduce and extend the single-trajectory analysis workflow in omicverse, combining graph-based trajectory inference, RNA velocity coupling, and downstream fate scoring notebooks.”
SKILL.md and 1 other file in skills/single-trajectory of FreedomIntelligence/OpenClaw-Medical-Skills.
Open the folder on GitHubat commit b1f9b6e
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 9, 2026.
Single Trajectory Analysis next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Single Trajectory Analysis this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~1.1k | Automated safety check: Pass | None | |
| Jupyter Notebookmicrosoft/ai-agents-for-beginners | 77k | 8 repos | ~1k | Automated safety check: Pass | Apache-2.0 | |
| Migrate Glue Devendpoint To Interactive Sessionsaws-samples/aws-glue-samples | 1.5k | — | ~3.6k | Automated safety check: Pass | MIT-0 | |
| Notebook For ExperimentJetBrains/intellij-community | 21k | — | ~4.4k | Automated safety check: Warn | Custom licence | |
| Jupyter To Marimoericmjl/llamabot | 183 | 2 repos | ~475 | Automated safety check: Pass | None | |
| Release Evidence WorkflowAli-Marandi/ClimateDataAnalyzer | 107 | — | ~1.6k | Automated safety check: Pass | MIT |
microsoft/ai-agents-for-beginners
A skill your agent uses when the user asks to create, scaffold, or edit Jupyter notebooks (.ipynb) for experiments, explorations, or tutorials; prefer the bundled templates and run the helper script…
aws-samples/aws-glue-samples
Migrate a legacy AWS Glue development endpoint to a Glue interactive session, following the official AWS migration checklist.
JetBrains/intellij-community
Create reproducible Jupyter notebooks for performance experiments.
ericmjl/llamabot
Convert a Jupyter notebook (.ipynb) to a marimo notebook (.py).
Ali-Marandi/ClimateDataAnalyzer
Build an auditable release-evidence workflow for a desktop or packaged application.
awdeorio/dotfiles
This skill should be used when the user asks to "review this notebook", "nbreview", "check my notebook", or otherwise requests a Jupyter notebook review.
FreedomIntelligence/OpenClaw-Medical-Skills
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.
FreedomIntelligence/OpenClaw-Medical-Skills
Select and apply numerical differentiation schemes for PDE/ODE discretization.
FreedomIntelligence/OpenClaw-Medical-Skills
FHIR API development guide for building healthcare endpoints.
FreedomIntelligence/OpenClaw-Medical-Skills
Select and configure linear solvers for systems Ax=b in dense and sparse problems.
FreedomIntelligence/OpenClaw-Medical-Skills
Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research.
FreedomIntelligence/OpenClaw-Medical-Skills
Plan and evaluate mesh generation for numerical simulations.
Works with
Categories
Guide to reproducing OmicVerse trajectory workflows spanning PAGA, Palantir, VIA, velocity coupling, and fate scoring notebooks. Single Trajectory Analysis is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Guide to reproducing OmicVerse trajectory workflows spanning PAGA, Palantir, VIA, velocity coupling, and fate scoring notebooks.
Single Trajectory Analysis fits situations like: data & Analytics work in your project.
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill single-trajectory-analysis -a claude-code`. Or copy the skill folder (skills/single-trajectory in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/single-trajectory-analysis in your project. Claude Code loads it when a task matches its description.
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill single-trajectory-analysis -a codex`. Or copy the skill folder (skills/single-trajectory in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/single-trajectory-analysis in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill single-trajectory-analysis -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/single-trajectory-analysis, .gemini/skills/single-trajectory-analysis, .github/skills/single-trajectory-analysis and .opencode/skills/single-trajectory-analysis in your project.
SKILL.md names no scripts, command-line tools or credentials: Single Trajectory Analysis is instructions for the agent only.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
No licence was found for Single Trajectory Analysis or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
About 1.1k tokens (SKILL.md is roughly 4.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Single Trajectory Analysis: Jupyter Notebook (microsoft/ai-agents-for-beginners, 77k stars), Migrate Glue Devendpoint To Interactive Sessions (aws-samples/aws-glue-samples, 1.5k stars), Notebook For Experiment (JetBrains/intellij-community, 21k stars) and Jupyter To Marimo (ericmjl/llamabot, 183 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.
