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Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Extract, analyze, and visualize simulation output data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Notes | No licence | 2 mo ago |
| 2 | Process multiple sequence files in batch using Biopython. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 3 | Visualize differential expression results using DESeq2/edgeR built-in functions. | FreedomIntelligence/ | 3.1k | 1 repo | ~3k | Automated safety check: Pass | No licence | 2 mo ago |
| 4 | Spillover compensation and data transformation for flow cytometry. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 5 | Read and manipulate Flow Cytometry Standard (FCS) files. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 6 | Process Hi-C read pairs using pairtools. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 7 | Compare Hi-C contact matrices between conditions to identify differential chromatin interactions. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 8 | Visualize Hi-C contact matrices, TADs, loops, and genomic features using matplotlib, cooltools, and HiCExplorer. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 9 | Detect chromatin loops and point interactions from Hi-C data using cooltools, chromosight, and HiCCUPS-like methods. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 10 | Call topologically associating domains (TADs) from Hi-C data using insulation score, HiCExplorer, and other methods. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 11 | Cell segmentation from multiplexed tissue images. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 12 | Load and preprocess imaging mass cytometry (IMC) and MIBI data. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 13 | Quality metrics for IMC data including signal-to-noise, channel correlation, tissue integrity, and acquisition QC. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 14 | Spatial analysis of cell neighborhoods and interactions in IMC data. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 15 | Tracks ctDNA dynamics over time for treatment response monitoring using serial liquid biopsy samples. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 16 | Visualize metagenomic profiles using R (phyloseq, microbiome) and Python (matplotlib, seaborn). | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 17 | Preprocessing and harmonization of multi-omics data before integration. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 18 | Visualize enrichment results using enrichplot package functions. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 19 | Load and parse mass spectrometry data formats including mzML, mzXML, and quantification tool outputs like MaxQuant proteinGroups.txt. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 20 | Generate variant statistics, sample concordance, and quality metrics using bcftools stats and gtcheck. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 21 | Extract, filter, annotate, and export differential expression results from DESeq2 or edgeR. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 22 | Analyze time-series RNA-seq data using limma voom with splines, maSigPro, and ImpulseDE2. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 23 | Interactive cell type annotation for IMC data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 24 | Cell type assignment from marker expression in IMC data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 25 | Quality control for long-read sequencing data using NanoPlot, NanoStat, and chopper. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 26 | MS-DIAL-based metabolomics preprocessing as alternative to XCMS. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 27 | Quality control and normalization for metabolomics data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 28 | Targeted metabolomics analysis using MRM/SRM with standard curves. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 29 | Gene Set Enrichment Analysis using clusterProfiler gseGO and gseKEGG. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 30 | Quality control and assessment for proteomics data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 31 | All-in-one read preprocessing with fastp including adapter trimming, quality filtering, deduplication, base correction, and HTML report generation. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 32 | Generate and interpret quality reports from FASTQ files using FastQC and MultiQC. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 33 | Validate Ribo-seq data quality by checking 3-nucleotide periodicity and calculating P-site offsets. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 34 | Calculate sequence statistics (N50, length distribution, GC content, summary reports) using Biopython. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 35 | Build spatial neighbor graphs for spatial transcriptomics data using Squidpy. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 36 | Quality control, filtering, normalization, and feature selection for spatial transcriptomics data. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 37 | Compute spatial statistics for spatial transcriptomics data using Squidpy. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 38 | Create publication-quality visualizations of immune repertoire data including circos plots, clone tracking, diversity plots, and network graphs. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 39 | Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files. | FreedomIntelligence/ | 3.1k | 1 repo | ~850 | Automated safety check: Pass | No licence | 2 mo ago |
| 40 | Assist Claude in running PyWGCNA through omicverse—preprocessing expression matrices, constructing co-expression modules, visualising eigengenes, and extracting hub genes. | FreedomIntelligence/ | 3.1k | 1 repo | ~971 | Automated safety check: Pass | No licence | 2 mo ago |
| 41 | ChIP-seq quality control metrics including FRiP (Fraction of Reads in Peaks), cross-correlation analysis (NSC/RSC), library complexity, and IDR (Irreproducibility Discovery Rate) for replicate… | FreedomIntelligence/ | 3.1k | — | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 42 | Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics. | FreedomIntelligence/ | 3.1k | — | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 43 | Quality control for pooled CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 44 | Calculates molecular descriptors and fingerprints using RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 45 | Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 46 | Query myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request. | FreedomIntelligence/ | 3.1k | — | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 47 | Visualize copy number profiles, segments, and compare across samples. | FreedomIntelligence/ | 3.1k | — | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 48 | Statistical analysis for metabolomics data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
