Scikit Learn
zLanqing/codex-claude-academic-skills
Machine learning in Python with scikit-learn. An agent skill from zLanqing/codex-claude-academic-skills.
Agent skill
Tcga Bulk Data Preprocessing With Omicverse
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files.
Install Tcga Bulk Data Preprocessing With Omicverse
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill tcga-bulk-data-preprocessing-with-omicverse -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills tcga-bulk-data-preprocessing-with-omicverse --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/tcga-preprocessing .claude/skills/tcga-bulk-data-preprocessing-with-omicverse && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "tcga-bulk-data-preprocessing-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/tcga-preprocessing into .claude/skills/tcga-bulk-data-preprocessing-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tcga-bulk-data-preprocessing-with-omicverse", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/tcga-preprocessingType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill tcga-bulk-data-preprocessing-with-omicverse -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills tcga-bulk-data-preprocessing-with-omicverse --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/tcga-preprocessing .agents/skills/tcga-bulk-data-preprocessing-with-omicverse && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "tcga-bulk-data-preprocessing-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/tcga-preprocessing into .agents/skills/tcga-bulk-data-preprocessing-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tcga-bulk-data-preprocessing-with-omicverse", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill tcga-bulk-data-preprocessing-with-omicverse -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills tcga-bulk-data-preprocessing-with-omicverse --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/tcga-preprocessing .cursor/skills/tcga-bulk-data-preprocessing-with-omicverse && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "tcga-bulk-data-preprocessing-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/tcga-preprocessing into .cursor/skills/tcga-bulk-data-preprocessing-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tcga-bulk-data-preprocessing-with-omicverse", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/tcga-preprocessing--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill tcga-bulk-data-preprocessing-with-omicverse -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills tcga-bulk-data-preprocessing-with-omicverse --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/tcga-preprocessing .gemini/skills/tcga-bulk-data-preprocessing-with-omicverse && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "tcga-bulk-data-preprocessing-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/tcga-preprocessing into .gemini/skills/tcga-bulk-data-preprocessing-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tcga-bulk-data-preprocessing-with-omicverse", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills tcga-bulk-data-preprocessing-with-omicverseInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill tcga-bulk-data-preprocessing-with-omicverse -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/tcga-preprocessing .github/skills/tcga-bulk-data-preprocessing-with-omicverse && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "tcga-bulk-data-preprocessing-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/tcga-preprocessing into .github/skills/tcga-bulk-data-preprocessing-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tcga-bulk-data-preprocessing-with-omicverse", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill tcga-bulk-data-preprocessing-with-omicverse -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills tcga-bulk-data-preprocessing-with-omicverse --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/tcga-preprocessing .opencode/skills/tcga-bulk-data-preprocessing-with-omicverse && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "tcga-bulk-data-preprocessing-with-omicverse" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/tcga-preprocessing into .opencode/skills/tcga-bulk-data-preprocessing-with-omicverse/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "tcga-bulk-data-preprocessing-with-omicverse", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
tcga-bulk-data-preprocessing-with-omicverse- GitHub stars
- 3.1k
- Used in
- 1 other repo
- Token cost
- ~850 tokens
- SKILL.md length
- 317 words
- Files
- 2
- Skills in repo
- 170
- Repo updated
- First seen
- Licence
- None found
At a glance
Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files.
- Works in 7 steps: Gather required downloads → Initialise the TCGA helper → Persist the dataset → …
- Tasks that involve Machine learning
- SKILL.md covers Overview, Instructions, Examples and References
- Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
What it does
Tcga Bulk Data Preprocessing With Omicverse is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files.
Its SKILL.md is about 850 tokens, which your agent loads only when the skill is triggered. The skill folder holds 1 other file (for example `reference.md`).
It sits in Data & Analytics, covering Machine learning. It works with AnnData. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Tasks that involve Machine learning
Example prompts
- “/tcga-bulk-data-preprocessing-with-omicverse”
Workflow steps
7 steps, taken from the first numbered list in SKILL.md.
- Gather required downloads
- Initialise the TCGA helper
- Persist the dataset
- Initialise metadata and clinical information
- Perform survival analyses
- Export results
- Troubleshooting tips
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Tcga Bulk Data Preprocessing With Omicverse loads about 850 tokens when it runs. Until then it costs about 55 tokens; SKILL.md has 317 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 317 words (~850 tokens).
“Follow this skill to recreate the preprocessing routine from t_tcga.ipynb. It automates loading TCGA downloads, generating raw/normalised matrices, initialising metadata, and running survival analyses through ov.bulk.pyTCGA.”
- name
- tcga-bulk-data-preprocessing-with-omicverse
- title
- TCGA bulk data preprocessing with omicverse
Files
SKILL.md and 1 other file in skills/tcga-preprocessing of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- reference.md
Open the folder on GitHubat commit b1f9b6e
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Tcga Bulk Data Preprocessing With Omicverse next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Tcga Bulk Data Preprocessing With Omicverse this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~850 | Automated safety check: Pass | None | |
| Scikit LearnzLanqing/codex-claude-academic-skills | 4.6k | 17 repos | ~3.9k | Automated safety check: Pass | BSD-3-Clause | |
| Senior Data ScientistRaidriar7170/hermes-skilleval | 125 | 6 repos | ~1.4k | Automated safety check: Pass | MIT | |
| Agentic Kaggle WorkflowFrankS-IntelLab/agentic-kaggle-skill | 188 | — | ~4k | Automated safety check: Pass | MIT | |
| Retention Analysisliangdabiao/claude-data-analysis-ultra-main | 290 | 1 repos | ~1.3k | Automated safety check: Notes | None | |
| Geomlitalo-goncalves/geoML | 109 | — | ~4.2k | Automated safety check: Pass | GPL-3.0 |
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Works with
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Questions about Tcga Bulk Data Preprocessing With Omicverse
What does Tcga Bulk Data Preprocessing With Omicverse do?
Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files. Tcga Bulk Data Preprocessing With Omicverse is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files.
When should I use Tcga Bulk Data Preprocessing With Omicverse?
Tcga Bulk Data Preprocessing With Omicverse fits situations like: tasks that involve Machine learning.
How do I install Tcga Bulk Data Preprocessing With Omicverse in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill tcga-bulk-data-preprocessing-with-omicverse -a claude-code`. Or copy the skill folder (skills/tcga-preprocessing in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/tcga-bulk-data-preprocessing-with-omicverse in your project. Claude Code loads it when a task matches its description.
How do I install Tcga Bulk Data Preprocessing With Omicverse in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill tcga-bulk-data-preprocessing-with-omicverse -a codex`. Or copy the skill folder (skills/tcga-preprocessing in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/tcga-bulk-data-preprocessing-with-omicverse in your project. Codex loads it when a task matches its description.
Can I use Tcga Bulk Data Preprocessing With Omicverse in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill tcga-bulk-data-preprocessing-with-omicverse -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/tcga-bulk-data-preprocessing-with-omicverse, .gemini/skills/tcga-bulk-data-preprocessing-with-omicverse, .github/skills/tcga-bulk-data-preprocessing-with-omicverse and .opencode/skills/tcga-bulk-data-preprocessing-with-omicverse in your project.
What does Tcga Bulk Data Preprocessing With Omicverse need to run?
SKILL.md names no scripts, command-line tools or credentials: Tcga Bulk Data Preprocessing With Omicverse is instructions for the agent only.
Does Tcga Bulk Data Preprocessing With Omicverse access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Tcga Bulk Data Preprocessing With Omicverse safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Tcga Bulk Data Preprocessing With Omicverse use?
No licence was found for Tcga Bulk Data Preprocessing With Omicverse or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Tcga Bulk Data Preprocessing With Omicverse use?
About 850 tokens (SKILL.md is roughly 3.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Tcga Bulk Data Preprocessing With Omicverse?
Skills that share tags, products or a category with Tcga Bulk Data Preprocessing With Omicverse: Scikit Learn (zLanqing/codex-claude-academic-skills, 4.6k stars), Senior Data Scientist (Raidriar7170/hermes-skilleval, 125 stars), Agentic Kaggle Workflow (FrankS-IntelLab/agentic-kaggle-skill, 188 stars) and Retention Analysis (liangdabiao/claude-data-analysis-ultra-main, 290 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Tcga Bulk Data Preprocessing With Omicverse?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 170 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.