Bio Workflows Methylation Pipeline
GPTomics/bioSkills
Orchestrates the end-to-end bisulfite/EM-seq methylation pipeline from FASTQ to differentially methylated regions, chaining Trim Galore/fastp QC, Bismark alignment + deduplication, methylation…
Agent skill
Bio Multi Omics Data Harmonization
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Preprocessing and harmonization of multi-omics data before integration.
Install Bio Multi Omics Data Harmonization
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-multi-omics-data-harmonization -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-multi-omics-data-harmonization --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-multi-omics-data-harmonization .claude/skills/bio-multi-omics-data-harmonization && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-multi-omics-data-harmonization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-multi-omics-data-harmonization into .claude/skills/bio-multi-omics-data-harmonization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-multi-omics-data-harmonization", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-multi-omics-data-harmonizationType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-multi-omics-data-harmonization -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-multi-omics-data-harmonization --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-multi-omics-data-harmonization .agents/skills/bio-multi-omics-data-harmonization && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-multi-omics-data-harmonization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-multi-omics-data-harmonization into .agents/skills/bio-multi-omics-data-harmonization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-multi-omics-data-harmonization", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-multi-omics-data-harmonization -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-multi-omics-data-harmonization --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-multi-omics-data-harmonization .cursor/skills/bio-multi-omics-data-harmonization && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-multi-omics-data-harmonization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-multi-omics-data-harmonization into .cursor/skills/bio-multi-omics-data-harmonization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-multi-omics-data-harmonization", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-multi-omics-data-harmonization--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-multi-omics-data-harmonization -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-multi-omics-data-harmonization --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-multi-omics-data-harmonization .gemini/skills/bio-multi-omics-data-harmonization && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-multi-omics-data-harmonization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-multi-omics-data-harmonization into .gemini/skills/bio-multi-omics-data-harmonization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-multi-omics-data-harmonization", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-multi-omics-data-harmonizationInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-multi-omics-data-harmonization -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-multi-omics-data-harmonization .github/skills/bio-multi-omics-data-harmonization && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-multi-omics-data-harmonization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-multi-omics-data-harmonization into .github/skills/bio-multi-omics-data-harmonization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-multi-omics-data-harmonization", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-multi-omics-data-harmonization -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-multi-omics-data-harmonization --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-multi-omics-data-harmonization .opencode/skills/bio-multi-omics-data-harmonization && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-multi-omics-data-harmonization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-multi-omics-data-harmonization into .opencode/skills/bio-multi-omics-data-harmonization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-multi-omics-data-harmonization", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-multi-omics-data-harmonization- GitHub stars
- 3.1k
- Used in
- 1 other repo
- Token cost
- ~1.9k tokens
- SKILL.md length
- 172 words
- Files
- 3
- Skills in repo
- 170
- Repo updated
- First seen
- Licence
- None found
At a glance
Preprocessing and harmonization of multi-omics data before integration.
- Preparing multi-omics datasets for integration analysis
- SKILL.md covers Version Compatibility, MultiAssayExperiment Structure, Normalization Per Assay and Cross-Omics Batch Correction, plus 6 more sections
- Runs R scripts from its folder
- Tasks that involve Data cleaning
What it does
Bio Multi Omics Data Harmonization is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Preprocessing and harmonization of multi-omics data before integration. Covers normalization, batch correction, feature alignment, and missing value handling across data types. Use when preparing multi-omics datasets for integration analysis.
Its SKILL.md is about 1.9k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `usage-guide.md`).
It sits in Data & Analytics, covering Data cleaning and Database schema design. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Preparing multi-omics datasets for integration analysis
- Tasks that involve Data cleaning
- Tasks that involve Database schema design
Example prompts
- “/bio-multi-omics-data-harmonization”
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (R), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Multi Omics Data Harmonization loads about 1.9k tokens when it runs. Until then it costs about 69 tokens; SKILL.md has 172 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 172 words (~1,869 tokens).
“Reference examples tested with: DESeq2 1.42+”
- name
- bio-multi-omics-data-harmonization
- tool_type
- r
- primary_tool
- MultiAssayExperiment
Files
SKILL.md and 2 other files in skills/bio-multi-omics-data-harmonization of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/harmonize_data.R
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Bio Multi Omics Data Harmonization next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Multi Omics Data Harmonization this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~1.9k | Automated safety check: Pass | None | |
| Bio Workflows Methylation PipelineGPTomics/bioSkills | 1.2k | 1 repos | ~3.7k | Automated safety check: Pass | MIT | |
| Bio Metabolomics Normalization QcGPTomics/bioSkills | 1.2k | 1 repos | ~5k | Automated safety check: Pass | MIT | |
| Podium Contact Dedupjeremylongshore/tons-of-skills-marketplace | 2.8k | — | ~4.8k | Automated safety check: Pass | MIT | |
| Bio Proteomics Differential AbundanceGPTomics/bioSkills | 1.2k | 1 repos | ~5.7k | Automated safety check: Pass | MIT | |
| Bloodhound AnalysisSpecterOps/skills | 702 | — | ~1.4k | Automated safety check: Pass | MIT |
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Related
Questions about Bio Multi Omics Data Harmonization
What does Bio Multi Omics Data Harmonization do?
Preprocessing and harmonization of multi-omics data before integration. Bio Multi Omics Data Harmonization is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Preprocessing and harmonization of multi-omics data before integration.
When should I use Bio Multi Omics Data Harmonization?
Bio Multi Omics Data Harmonization fits situations like: preparing multi-omics datasets for integration analysis; tasks that involve Data cleaning; tasks that involve Database schema design.
How do I install Bio Multi Omics Data Harmonization in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-multi-omics-data-harmonization -a claude-code`. Or copy the skill folder (skills/bio-multi-omics-data-harmonization in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-multi-omics-data-harmonization in your project. Claude Code loads it when a task matches its description.
How do I install Bio Multi Omics Data Harmonization in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-multi-omics-data-harmonization -a codex`. Or copy the skill folder (skills/bio-multi-omics-data-harmonization in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-multi-omics-data-harmonization in your project. Codex loads it when a task matches its description.
Can I use Bio Multi Omics Data Harmonization in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-multi-omics-data-harmonization -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-multi-omics-data-harmonization, .gemini/skills/bio-multi-omics-data-harmonization, .github/skills/bio-multi-omics-data-harmonization and .opencode/skills/bio-multi-omics-data-harmonization in your project.
What does Bio Multi Omics Data Harmonization need to run?
Going by SKILL.md and its folder, Bio Multi Omics Data Harmonization needs R for the scripts in its folder.
Does Bio Multi Omics Data Harmonization access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Bio Multi Omics Data Harmonization safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Multi Omics Data Harmonization use?
No licence was found for Bio Multi Omics Data Harmonization or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Multi Omics Data Harmonization use?
About 1.9k tokens (SKILL.md is roughly 7.5k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Multi Omics Data Harmonization?
Skills that share tags, products or a category with Bio Multi Omics Data Harmonization: Bio Workflows Methylation Pipeline (GPTomics/bioSkills, 1.2k stars), Bio Metabolomics Normalization Qc (GPTomics/bioSkills, 1.2k stars), Podium Contact Dedup (jeremylongshore/tons-of-skills-marketplace, 2.8k stars) and Bio Proteomics Differential Abundance (GPTomics/bioSkills, 1.2k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Multi Omics Data Harmonization?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 170 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.