Exploratory Data Analysis
spacering-net/codeg
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats.
Agent skill
Bio Clinical Databases Polygenic Risk
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics.
Install Bio Clinical Databases Polygenic Risk
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-polygenic-risk -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-polygenic-risk --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-clinical-databases-polygenic-risk .claude/skills/bio-clinical-databases-polygenic-risk && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-clinical-databases-polygenic-risk" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-polygenic-risk into .claude/skills/bio-clinical-databases-polygenic-risk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-polygenic-risk", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-polygenic-riskType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-polygenic-risk -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-polygenic-risk --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-clinical-databases-polygenic-risk .agents/skills/bio-clinical-databases-polygenic-risk && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-clinical-databases-polygenic-risk" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-polygenic-risk into .agents/skills/bio-clinical-databases-polygenic-risk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-polygenic-risk", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-polygenic-risk -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-polygenic-risk --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-clinical-databases-polygenic-risk .cursor/skills/bio-clinical-databases-polygenic-risk && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-clinical-databases-polygenic-risk" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-polygenic-risk into .cursor/skills/bio-clinical-databases-polygenic-risk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-polygenic-risk", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-clinical-databases-polygenic-risk--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-polygenic-risk -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-polygenic-risk --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-clinical-databases-polygenic-risk .gemini/skills/bio-clinical-databases-polygenic-risk && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-clinical-databases-polygenic-risk" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-polygenic-risk into .gemini/skills/bio-clinical-databases-polygenic-risk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-polygenic-risk", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-polygenic-riskInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-polygenic-risk -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-clinical-databases-polygenic-risk .github/skills/bio-clinical-databases-polygenic-risk && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-clinical-databases-polygenic-risk" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-polygenic-risk into .github/skills/bio-clinical-databases-polygenic-risk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-polygenic-risk", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-polygenic-risk -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-polygenic-risk --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-clinical-databases-polygenic-risk .opencode/skills/bio-clinical-databases-polygenic-risk && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-clinical-databases-polygenic-risk" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-polygenic-risk into .opencode/skills/bio-clinical-databases-polygenic-risk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-polygenic-risk", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-clinical-databases-polygenic-risk- GitHub stars
- 3.1k
- Token cost
- ~1.9k tokens
- SKILL.md length
- 344 words
- Files
- 4
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics.
- Predicting disease risk from genome-wide genetic variants
- SKILL.md covers Version Compatibility, PRSice-2 Workflow, GWAS Summary Statistics Format and LDpred2 (R), plus 6 more sections
- Runs R and Shell scripts from its folder; calls python and pip; reaches pgscatalog.org
- Tasks that involve Data analysis
What it does
Bio Clinical Databases Polygenic Risk is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics. Use when predicting disease risk from genome-wide genetic variants.
Its SKILL.md is about 1.9k tokens, which your agent loads only when the skill is triggered. The skill folder holds 4 other files (for example `examples/prsice2_workflow.sh` and `usage-guide.md`).
It sits in Data & Analytics, covering Data analysis and Bioinformatics. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Predicting disease risk from genome-wide genetic variants
- Tasks that involve Data analysis
- Tasks that involve Bioinformatics
Example prompts
- “/bio-clinical-databases-polygenic-risk”
Requirements
- Python 3
- A Bash shell
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (R and Shell), which the agent can run.
Shell commands in SKILL.md call:
pythonpip
From the folder's file list and the shell code blocks in SKILL.md.
Network
Hosts in commands or code, which the agent is likely to contact:
pgscatalog.org
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Clinical Databases Polygenic Risk loads about 1.9k tokens when it runs. Until then it costs about 51 tokens; SKILL.md has 344 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 344 words (~1,940 tokens).
“Reference examples tested with: LDpred2 1.14+, PRSice-2 2.3+, numpy 1.26+, scipy 1.12+”
- name
- bio-clinical-databases-polygenic-risk
- tool_type
- mixed
- primary_tool
- PRSice-2
Files
SKILL.md and 3 other files in skills/bio-clinical-databases-polygenic-risk of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/ldpred2_analysis.R
- examples/prsice2_workflow.sh
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Compare with similar skills
Bio Clinical Databases Polygenic Risk next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Clinical Databases Polygenic Risk this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | — | ~1.9k | Automated safety check: Pass | None | |
| Exploratory Data Analysisspacering-net/codeg | 3.9k | 14 repos | ~3.6k | Automated safety check: Pass | MIT | |
| Pyopenmsdavila7/claude-code-templates | 32k | 11 repos | ~1.4k | Automated safety check: Pass | MIT | |
| Gwas Databasedavila7/claude-code-templates | 32k | 10 repos | ~5k | Automated safety check: Pass | MIT | |
| Bioconductor BiomartbioMate-AI/biomate-bioconductor-kb | 804 | — | ~4.5k | Automated safety check: Pass | Custom licence | |
| Bio Data Visualization Manhattan Qq LocuszoomGPTomics/bioSkills | 1.2k | 2 repos | ~4.3k | Automated safety check: Pass | MIT |
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Related
Categories
Questions about Bio Clinical Databases Polygenic Risk
What does Bio Clinical Databases Polygenic Risk do?
Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics. Bio Clinical Databases Polygenic Risk is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics.
When should I use Bio Clinical Databases Polygenic Risk?
Bio Clinical Databases Polygenic Risk fits situations like: predicting disease risk from genome-wide genetic variants; tasks that involve Data analysis; tasks that involve Bioinformatics.
How do I install Bio Clinical Databases Polygenic Risk in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-polygenic-risk -a claude-code`. Or copy the skill folder (skills/bio-clinical-databases-polygenic-risk in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-clinical-databases-polygenic-risk in your project. Claude Code loads it when a task matches its description.
How do I install Bio Clinical Databases Polygenic Risk in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-polygenic-risk -a codex`. Or copy the skill folder (skills/bio-clinical-databases-polygenic-risk in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-clinical-databases-polygenic-risk in your project. Codex loads it when a task matches its description.
Can I use Bio Clinical Databases Polygenic Risk in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-polygenic-risk -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-clinical-databases-polygenic-risk, .gemini/skills/bio-clinical-databases-polygenic-risk, .github/skills/bio-clinical-databases-polygenic-risk and .opencode/skills/bio-clinical-databases-polygenic-risk in your project.
What does Bio Clinical Databases Polygenic Risk need to run?
Going by SKILL.md and its folder, Bio Clinical Databases Polygenic Risk needs R and a shell for the scripts in its folder and the command-line tools its instructions call (python and pip). Our summary lists: Python 3; A Bash shell.
Does Bio Clinical Databases Polygenic Risk access the network?
SKILL.md names 1 domain. In commands or code: pgscatalog.org; the agent is likely to contact it when it follows the instructions. This is read from the text; nothing was executed.
Is Bio Clinical Databases Polygenic Risk safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Clinical Databases Polygenic Risk use?
No licence was found for Bio Clinical Databases Polygenic Risk or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Clinical Databases Polygenic Risk use?
About 1.9k tokens (SKILL.md is roughly 7.8k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Clinical Databases Polygenic Risk?
Skills that share tags, products or a category with Bio Clinical Databases Polygenic Risk: Exploratory Data Analysis (spacering-net/codeg, 3.9k stars), Pyopenms (davila7/claude-code-templates, 32k stars), Gwas Database (davila7/claude-code-templates, 32k stars) and Bioconductor Biomart (bioMate-AI/biomate-bioconductor-kb, 804 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Clinical Databases Polygenic Risk?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.