Agent skill

Bio Metabolomics Normalization Qc

by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills

Quality control and normalization for metabolomics data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills.

No licenceAuto-check passedDatabases

Install Bio Metabolomics Normalization Qc

skills CLI
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-normalization-qc -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-metabolomics-normalization-qc --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-metabolomics-normalization-qc .claude/skills/bio-metabolomics-normalization-qc && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
bio-metabolomics-normalization-qc
GitHub stars
3.1k
Used in
1 other repo
Token cost
~2.3k tokens
SKILL.md length
401 words
Files
3
Skills in repo
279
Repo updated
First seen
Licence
None found

At a glance

Quality control and normalization for metabolomics data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills.

  • Correcting technical variation in metabolomics data before statistical analysis
  • SKILL.md covers Version Compatibility, Load and Inspect Data, QC-Based Normalization (QC-RSC) and Total Ion Current (TIC)…, plus 7 more sections
  • Runs R scripts from its folder
  • Tasks that involve Database schema design

What it does

Bio Metabolomics Normalization Qc is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Quality control and normalization for metabolomics data. Covers QC-based correction, batch effect removal, and data transformation methods. Use when correcting technical variation in metabolomics data before statistical analysis.

Its SKILL.md is about 2.3k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `usage-guide.md`).

It sits in Databases, covering Database schema design, Data cleaning and Statistics. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.

When your agent uses it

  • Correcting technical variation in metabolomics data before statistical analysis
  • Tasks that involve Database schema design
  • Tasks that involve Data cleaning

Example prompts

  • “/bio-metabolomics-normalization-qc”

What it can do on your machine

Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships script files (R), which the agent can run.

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Bio Metabolomics Normalization Qc loads about 2.3k tokens when it runs. Until then it costs about 66 tokens; SKILL.md has 401 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~66
When it runs · the whole SKILL.md, loaded when a task matches
~2.3k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 401 words (~2,273 tokens).

“Reference examples tested with: xcms 4.0+”

— opening of SKILL.md by FreedomIntelligence
name
bio-metabolomics-normalization-qc
tool_type
r
primary_tool
MetaboAnalystR

Read the full SKILL.md on GitHub

Files

SKILL.md and 2 other files in skills/bio-metabolomics-normalization-qc of FreedomIntelligence/OpenClaw-Medical-Skills.

  • SKILL.md
  • examples/normalize_data.R
  • usage-guide.md

Open the folder on GitHubat commit b1f9b6e

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 9, 2026.

Compare with similar skills

Bio Metabolomics Normalization Qc next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Bio Metabolomics Normalization Qc compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Bio Metabolomics Normalization Qc this skillFreedomIntelligence/OpenClaw-Medical-Skills3.1k1 repos~2.3kAutomated safety check: PassNone
Bio Metabolomics Normalization QcGPTomics/bioSkills1.2k1 repos~5kAutomated safety check: PassMIT
Bio Metabolomics LipidomicsGPTomics/bioSkills1.2k1 repos~4.1kAutomated safety check: PassMIT
Databrain Intelligenceinfometa/workbuddyskills346—~8kAutomated safety check: PassNone
Bio Workflows Metabolomics PipelineGPTomics/bioSkills1.2k1 repos~4.8kAutomated safety check: PassMIT
Bio Workflows Methylation PipelineGPTomics/bioSkills1.2k1 repos~3.7kAutomated safety check: PassMIT

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  • Designs QC, corrects signal drift, removes batch effects, filters features, normalizes samples, and imputes missing values for untargeted LC-MS/GC-MS metabolomics, framing each step as a measurement…

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  • Bio Metabolomics Lipidomics

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  • Orchestrates the untargeted LC-MS metabolomics pipeline end-to-end (xcms 4.x feature extraction, QC/drift/normalization, confidence-stratified annotation, permutation-validated statistics…

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  • Orchestrates the end-to-end bisulfite/EM-seq methylation pipeline from FASTQ to differentially methylated regions, chaining Trim Galore/fastp QC, Bismark alignment + deduplication, methylation…

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Questions about Bio Metabolomics Normalization Qc

What does Bio Metabolomics Normalization Qc do?

Quality control and normalization for metabolomics data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Bio Metabolomics Normalization Qc is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Quality control and normalization for metabolomics data.

When should I use Bio Metabolomics Normalization Qc?

Bio Metabolomics Normalization Qc fits situations like: correcting technical variation in metabolomics data before statistical analysis; tasks that involve Database schema design; tasks that involve Data cleaning.

How do I install Bio Metabolomics Normalization Qc in Claude Code?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-normalization-qc -a claude-code`. Or copy the skill folder (skills/bio-metabolomics-normalization-qc in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-metabolomics-normalization-qc in your project. Claude Code loads it when a task matches its description.

How do I install Bio Metabolomics Normalization Qc in Codex?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-normalization-qc -a codex`. Or copy the skill folder (skills/bio-metabolomics-normalization-qc in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-metabolomics-normalization-qc in your project. Codex loads it when a task matches its description.

Can I use Bio Metabolomics Normalization Qc in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-normalization-qc -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-metabolomics-normalization-qc, .gemini/skills/bio-metabolomics-normalization-qc, .github/skills/bio-metabolomics-normalization-qc and .opencode/skills/bio-metabolomics-normalization-qc in your project.

What does Bio Metabolomics Normalization Qc need to run?

Going by SKILL.md and its folder, Bio Metabolomics Normalization Qc needs R for the scripts in its folder.

Does Bio Metabolomics Normalization Qc access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Bio Metabolomics Normalization Qc safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Bio Metabolomics Normalization Qc use?

No licence was found for Bio Metabolomics Normalization Qc or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Bio Metabolomics Normalization Qc use?

About 2.3k tokens (SKILL.md is roughly 9.1k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Bio Metabolomics Normalization Qc?

Skills that share tags, products or a category with Bio Metabolomics Normalization Qc: Bio Metabolomics Normalization Qc (GPTomics/bioSkills, 1.2k stars), Bio Metabolomics Lipidomics (GPTomics/bioSkills, 1.2k stars), Databrain Intelligence (infometa/workbuddyskills, 346 stars) and Bio Workflows Metabolomics Pipeline (GPTomics/bioSkills, 1.2k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Bio Metabolomics Normalization Qc?

FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.

Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.