Agent skill
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Spatial analysis of cell neighborhoods and interactions in IMC data.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-imaging-mass-cytometry-spatial-analysis -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-imaging-mass-cytometry-spatial-analysis --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-imaging-mass-cytometry-spatial-analysis .claude/skills/bio-imaging-mass-cytometry-spatial-analysis && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-imaging-mass-cytometry-spatial-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-imaging-mass-cytometry-spatial-analysis into .claude/skills/bio-imaging-mass-cytometry-spatial-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-imaging-mass-cytometry-spatial-analysis", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-imaging-mass-cytometry-spatial-analysisType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-imaging-mass-cytometry-spatial-analysis -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-imaging-mass-cytometry-spatial-analysis --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-imaging-mass-cytometry-spatial-analysis .agents/skills/bio-imaging-mass-cytometry-spatial-analysis && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-imaging-mass-cytometry-spatial-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-imaging-mass-cytometry-spatial-analysis into .agents/skills/bio-imaging-mass-cytometry-spatial-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-imaging-mass-cytometry-spatial-analysis", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-imaging-mass-cytometry-spatial-analysis -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-imaging-mass-cytometry-spatial-analysis --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-imaging-mass-cytometry-spatial-analysis .cursor/skills/bio-imaging-mass-cytometry-spatial-analysis && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-imaging-mass-cytometry-spatial-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-imaging-mass-cytometry-spatial-analysis into .cursor/skills/bio-imaging-mass-cytometry-spatial-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-imaging-mass-cytometry-spatial-analysis", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-imaging-mass-cytometry-spatial-analysis--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-imaging-mass-cytometry-spatial-analysis -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-imaging-mass-cytometry-spatial-analysis --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-imaging-mass-cytometry-spatial-analysis .gemini/skills/bio-imaging-mass-cytometry-spatial-analysis && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-imaging-mass-cytometry-spatial-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-imaging-mass-cytometry-spatial-analysis into .gemini/skills/bio-imaging-mass-cytometry-spatial-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-imaging-mass-cytometry-spatial-analysis", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-imaging-mass-cytometry-spatial-analysisInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-imaging-mass-cytometry-spatial-analysis -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-imaging-mass-cytometry-spatial-analysis .github/skills/bio-imaging-mass-cytometry-spatial-analysis && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-imaging-mass-cytometry-spatial-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-imaging-mass-cytometry-spatial-analysis into .github/skills/bio-imaging-mass-cytometry-spatial-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-imaging-mass-cytometry-spatial-analysis", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-imaging-mass-cytometry-spatial-analysis -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-imaging-mass-cytometry-spatial-analysis --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-imaging-mass-cytometry-spatial-analysis .opencode/skills/bio-imaging-mass-cytometry-spatial-analysis && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-imaging-mass-cytometry-spatial-analysis" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-imaging-mass-cytometry-spatial-analysis into .opencode/skills/bio-imaging-mass-cytometry-spatial-analysis/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-imaging-mass-cytometry-spatial-analysis", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
bio-imaging-mass-cytometry-spatial-analysisSpatial analysis of cell neighborhoods and interactions in IMC data.
Bio Imaging Mass Cytometry Spatial Analysis is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Spatial analysis of cell neighborhoods and interactions in IMC data. Covers neighbor graphs, spatial statistics, and interaction testing. Use when analyzing spatial relationships between cell types, testing for neighborhood enrichment, or identifying cell-cell interaction patterns in imaging mass cytometry data.
Its SKILL.md is about 1.9k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/spatial_analysis.py` and `usage-guide.md`).
It sits in Data & Analytics, covering Geospatial analysis and Statistics. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Ships script files (Python), which the agent can run.
Shell commands in SKILL.md call:
pipFrom the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Bio Imaging Mass Cytometry Spatial Analysis loads about 1.9k tokens when it runs. Until then it costs about 89 tokens; SKILL.md has 178 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
Without a licence we can't republish the file, so here is its outline and opening line. It has 178 words (~1,915 tokens).
“Reference examples tested with: anndata 0.10+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, scipy 1.12+, squidpy 1.3+”
SKILL.md and 2 other files in skills/bio-imaging-mass-cytometry-spatial-analysis of FreedomIntelligence/OpenClaw-Medical-Skills.
Open the folder on GitHubat commit b1f9b6e
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.
Bio Imaging Mass Cytometry Spatial Analysis next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Imaging Mass Cytometry Spatial Analysis this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~1.9k | Automated safety check: Pass | None | |
| Aaag Data Analysisbrycewang-stanford/Awesome-Journal-Skills | 1.2k | — | ~1.3k | Automated safety check: Pass | MIT | |
| Bio Workflows Imc PipelineGPTomics/bioSkills | 1.2k | 1 repos | ~4.6k | Automated safety check: Pass | MIT | |
| Sandbox Benchvercel/next.js | 143k | — | ~4.1k | Automated safety check: Pass | MIT | |
| Statistical Analysisspacering-net/codeg | 3.9k | 3 repos | ~5k | Automated safety check: Pass | MIT | |
| StatsmodelszLanqing/codex-claude-academic-skills | 4.7k | 15 repos | ~4.9k | Automated safety check: Pass | BSD-3-Clause |
brycewang-stanford/Awesome-Journal-Skills
A skill your agent uses when running and reporting the analysis for an Annals of the American Association of Geographers manuscript — spatial statistics and modeling, remote-sensing accuracy, or…
GPTomics/bioSkills
Orchestrates imaging mass cytometry from raw MCD acquisitions to patient-level spatial analysis, chaining steinbock preprocessing, Mesmer/Cellpose segmentation, single-cell quantification…
vercel/next.js
Benchmark React or Next.js changes on Vercel Sandbox VMs with paired A/B statistics: react PR/commit vs base, or Next.js PR/commit vs base, measured end-to-end through the bench/render-pipeline app…
spacering-net/codeg
Guided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, and APA-formatted reporting.
zLanqing/codex-claude-academic-skills
Statistical models library for Python. An agent skill from zLanqing/codex-claude-academic-skills.
antvis/L7
Comprehensive guide for AntV L7 geospatial visualization library.
FreedomIntelligence/OpenClaw-Medical-Skills
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.
FreedomIntelligence/OpenClaw-Medical-Skills
Select and apply numerical differentiation schemes for PDE/ODE discretization.
FreedomIntelligence/OpenClaw-Medical-Skills
FHIR API development guide for building healthcare endpoints.
FreedomIntelligence/OpenClaw-Medical-Skills
Select and configure linear solvers for systems Ax=b in dense and sparse problems.
FreedomIntelligence/OpenClaw-Medical-Skills
Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research.
FreedomIntelligence/OpenClaw-Medical-Skills
Plan and evaluate mesh generation for numerical simulations.
Categories
Spatial analysis of cell neighborhoods and interactions in IMC data. Bio Imaging Mass Cytometry Spatial Analysis is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Spatial analysis of cell neighborhoods and interactions in IMC data.
Bio Imaging Mass Cytometry Spatial Analysis fits situations like: analyzing spatial relationships between cell types; testing for neighborhood enrichment; identifying cell-cell interaction patterns in imaging mass cytometry data.
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-imaging-mass-cytometry-spatial-analysis -a claude-code`. Or copy the skill folder (skills/bio-imaging-mass-cytometry-spatial-analysis in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-imaging-mass-cytometry-spatial-analysis in your project. Claude Code loads it when a task matches its description.
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-imaging-mass-cytometry-spatial-analysis -a codex`. Or copy the skill folder (skills/bio-imaging-mass-cytometry-spatial-analysis in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-imaging-mass-cytometry-spatial-analysis in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-imaging-mass-cytometry-spatial-analysis -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-imaging-mass-cytometry-spatial-analysis, .gemini/skills/bio-imaging-mass-cytometry-spatial-analysis, .github/skills/bio-imaging-mass-cytometry-spatial-analysis and .opencode/skills/bio-imaging-mass-cytometry-spatial-analysis in your project.
Going by SKILL.md and its folder, Bio Imaging Mass Cytometry Spatial Analysis needs Python for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.
SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
No licence was found for Bio Imaging Mass Cytometry Spatial Analysis or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
About 1.9k tokens (SKILL.md is roughly 7.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Bio Imaging Mass Cytometry Spatial Analysis: Aaag Data Analysis (brycewang-stanford/Awesome-Journal-Skills, 1.2k stars), Bio Workflows Imc Pipeline (GPTomics/bioSkills, 1.2k stars), Sandbox Bench (vercel/next.js, 143k stars) and Statistical Analysis (spacering-net/codeg, 3.9k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.
