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Agent skill

Bio Structural Biology Modern Structure Prediction

by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills

Predict protein structures using modern ML models including AlphaFold3, ESMFold, Chai-1, and Boltz-1.

No licenceAuto-check passedResearch & Science

Install Bio Structural Biology Modern Structure Prediction

skills CLI
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-structural-biology-modern-structure-prediction -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-structural-biology-modern-structure-prediction --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-structural-biology-modern-structure-prediction .claude/skills/bio-structural-biology-modern-structure-prediction && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
bio-structural-biology-modern-structure-prediction
GitHub stars
3.1k
Used in
1 other repo
Token cost
~2.5k tokens
SKILL.md length
397 words
Files
4
Skills in repo
279
Repo updated
First seen
Licence
None found

At a glance

Predict protein structures using modern ML models including AlphaFold3, ESMFold, Chai-1, and Boltz-1.

  • Predicting structures for novel proteins
  • SKILL.md covers Version Compatibility, Model Comparison, ESMFold (Fastest Single-Chain) and AlphaFold3 (Server), plus 7 more sections
  • Runs Python scripts from its folder; calls pip; reaches api.esmatlas.com
  • Protein complexes

What it does

Bio Structural Biology Modern Structure Prediction is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Predict protein structures using modern ML models including AlphaFold3, ESMFold, Chai-1, and Boltz-1. Use when predicting structures for novel proteins, protein complexes, or when comparing predictions across multiple methods.

Its SKILL.md is about 2.5k tokens, which your agent loads only when the skill is triggered. The skill folder holds 4 other files (for example `examples/compare_predictions.py`, `examples/esmfold_api.py` and `usage-guide.md`).

It sits in Research & Science, covering Protein structure and design, Machine learning and Creative writing and fiction. It works with Python. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.

When your agent uses it

  • Predicting structures for novel proteins
  • Protein complexes
  • Comparing predictions across multiple methods

Example prompts

  • “/bio-structural-biology-modern-structure-prediction”

Requirements

  • Python 3

What it can do on your machine

Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships script files (Python), which the agent can run.

    Shell commands in SKILL.md call:

    • pip

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    Hosts in commands or code, which the agent is likely to contact:

    • api.esmatlas.com

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Bio Structural Biology Modern Structure Prediction loads about 2.5k tokens when it runs. Until then it costs about 69 tokens; SKILL.md has 397 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~69
When it runs · the whole SKILL.md, loaded when a task matches
~2.5k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 397 words (~2,540 tokens).

“Reference examples tested with: BioPython 1.83+, numpy 1.26+”

— opening of SKILL.md by FreedomIntelligence
name
bio-structural-biology-modern-structure-prediction
tool_type
python
primary_tool
ESMFold

Read the full SKILL.md on GitHub

Files

SKILL.md and 3 other files in skills/bio-structural-biology-modern-structure-prediction of FreedomIntelligence/OpenClaw-Medical-Skills.

  • SKILL.md
  • examples/compare_predictions.py
  • examples/esmfold_api.py
  • usage-guide.md

Open the folder on GitHubat commit b1f9b6e

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Bio Structural Biology Modern Structure Prediction next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Bio Structural Biology Modern Structure Prediction compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Bio Structural Biology Modern Structure Prediction this skillFreedomIntelligence/OpenClaw-Medical-Skills3.1k1 repos~2.5kAutomated safety check: PassNone
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DiffDock Molecular DockingK-Dense-AI/scientific-agent-skills48k1 repos~3kAutomated safety check: NotesMIT
DP-GEN Simplify Workflowjinzhezenggroup/computational-chemistry-agent-skills148—~2.7kAutomated safety check: PassLGPL-3.0-or-later
Gtars Genomic Interval Toolkitdavila7/claude-code-templates33k11 repos~1.9kAutomated safety check: PassMIT
PyHealth Clinical ML Toolkitdavila7/claude-code-templates33k11 repos~4.4kAutomated safety check: PassMIT

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Works with

Categories

Questions about Bio Structural Biology Modern Structure Prediction

What does Bio Structural Biology Modern Structure Prediction do?

Predict protein structures using modern ML models including AlphaFold3, ESMFold, Chai-1, and Boltz-1. Bio Structural Biology Modern Structure Prediction is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Predict protein structures using modern ML models including AlphaFold3, ESMFold, Chai-1, and Boltz-1.

When should I use Bio Structural Biology Modern Structure Prediction?

Bio Structural Biology Modern Structure Prediction fits situations like: predicting structures for novel proteins; protein complexes; comparing predictions across multiple methods.

How do I install Bio Structural Biology Modern Structure Prediction in Claude Code?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-structural-biology-modern-structure-prediction -a claude-code`. Or copy the skill folder (skills/bio-structural-biology-modern-structure-prediction in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-structural-biology-modern-structure-prediction in your project. Claude Code loads it when a task matches its description.

How do I install Bio Structural Biology Modern Structure Prediction in Codex?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-structural-biology-modern-structure-prediction -a codex`. Or copy the skill folder (skills/bio-structural-biology-modern-structure-prediction in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-structural-biology-modern-structure-prediction in your project. Codex loads it when a task matches its description.

Can I use Bio Structural Biology Modern Structure Prediction in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-structural-biology-modern-structure-prediction -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-structural-biology-modern-structure-prediction, .gemini/skills/bio-structural-biology-modern-structure-prediction, .github/skills/bio-structural-biology-modern-structure-prediction and .opencode/skills/bio-structural-biology-modern-structure-prediction in your project.

What does Bio Structural Biology Modern Structure Prediction need to run?

Going by SKILL.md and its folder, Bio Structural Biology Modern Structure Prediction needs Python for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.

Does Bio Structural Biology Modern Structure Prediction access the network?

SKILL.md names 1 domain. In commands or code: api.esmatlas.com; the agent is likely to contact it when it follows the instructions. This is read from the text; nothing was executed.

Is Bio Structural Biology Modern Structure Prediction safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Bio Structural Biology Modern Structure Prediction use?

No licence was found for Bio Structural Biology Modern Structure Prediction or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Bio Structural Biology Modern Structure Prediction use?

About 2.5k tokens (SKILL.md is roughly 10k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Bio Structural Biology Modern Structure Prediction?

Skills that share tags, products or a category with Bio Structural Biology Modern Structure Prediction: Qiskit 2.x Quantum ML Reference (aiming-lab/AutoResearchClaw, 15k stars), DiffDock Molecular Docking (K-Dense-AI/scientific-agent-skills, 48k stars), DP-GEN Simplify Workflow (jinzhezenggroup/computational-chemistry-agent-skills, 148 stars) and Gtars Genomic Interval Toolkit (davila7/claude-code-templates, 33k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Bio Structural Biology Modern Structure Prediction?

FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.

Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.