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Agent skill

Bio Structural Biology Alphafold Predictions

by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills

Access and analyze AlphaFold protein structure predictions. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills.

No licenceAuto-check passedResearch & Science

Install Bio Structural Biology Alphafold Predictions

skills CLI
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-structural-biology-alphafold-predictions -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-structural-biology-alphafold-predictions --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-structural-biology-alphafold-predictions .claude/skills/bio-structural-biology-alphafold-predictions && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
bio-structural-biology-alphafold-predictions
GitHub stars
3.1k
Used in
1 other repo
Token cost
~2.1k tokens
SKILL.md length
307 words
Files
3
Skills in repo
279
Repo updated
First seen
Licence
None found

At a glance

Access and analyze AlphaFold protein structure predictions. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills.

  • Predicted structures are needed for proteins without experimental structures
  • SKILL.md covers Version Compatibility, Download Structures, File Types Available and Analyze pLDDT Confidence Scores, plus 4 more sections
  • Runs Python scripts from its folder; calls pip; reaches alphafold.ebi.ac.uk
  • For confidence scores (pLDDT)

What it does

Bio Structural Biology Alphafold Predictions is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Access and analyze AlphaFold protein structure predictions. Use when predicted structures are needed for proteins without experimental structures, or for confidence scores (pLDDT).

Its SKILL.md is about 2.1k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/download_alphafold.py` and `usage-guide.md`).

It sits in Research & Science, covering Protein structure and design. It works with AlphaFold and UniProt. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.

When your agent uses it

  • Predicted structures are needed for proteins without experimental structures
  • For confidence scores (pLDDT)

Example prompts

  • “/bio-structural-biology-alphafold-predictions”

Requirements

  • Python 3

What it can do on your machine

Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships script files (Python), which the agent can run.

    Shell commands in SKILL.md call:

    • pip

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    Hosts in commands or code, which the agent is likely to contact:

    • alphafold.ebi.ac.uk

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Bio Structural Biology Alphafold Predictions loads about 2.1k tokens when it runs. Until then it costs about 56 tokens; SKILL.md has 307 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~56
When it runs · the whole SKILL.md, loaded when a task matches
~2.1k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 307 words (~2,136 tokens).

“Reference examples tested with: BioPython 1.83+, matplotlib 3.8+, numpy 1.26+, scanpy 1.10+”

— opening of SKILL.md by FreedomIntelligence
name
bio-structural-biology-alphafold-predictions
tool_type
python
primary_tool
requests

Read the full SKILL.md on GitHub

Files

SKILL.md and 2 other files in skills/bio-structural-biology-alphafold-predictions of FreedomIntelligence/OpenClaw-Medical-Skills.

  • SKILL.md
  • examples/download_alphafold.py
  • usage-guide.md

Open the folder on GitHubat commit b1f9b6e

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Bio Structural Biology Alphafold Predictions next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Bio Structural Biology Alphafold Predictions compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Bio Structural Biology Alphafold Predictions this skillFreedomIntelligence/OpenClaw-Medical-Skills3.1k1 repos~2.1kAutomated safety check: PassNone
Alphafold Database Fetch And Analyzegoogle-deepmind/science-skills3.2k2 repos~1.2kAutomated safety check: PassApache-2.0
Bio DB ToolsDrugClaw/DrugClaw126—~1.4kAutomated safety check: PassApache-2.0
Ggetdavila7/claude-code-templates33k10 repos~6.3kAutomated safety check: PassMIT
Alphafold Databasedavila7/claude-code-templates33k10 repos~4kAutomated safety check: PassMIT
Foldseek Structural Searchgoogle-deepmind/science-skills3.2k1 repos~1.3kAutomated safety check: PassApache-2.0

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Works with

Categories

Questions about Bio Structural Biology Alphafold Predictions

What does Bio Structural Biology Alphafold Predictions do?

Access and analyze AlphaFold protein structure predictions. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Bio Structural Biology Alphafold Predictions is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Access and analyze AlphaFold protein structure predictions.

When should I use Bio Structural Biology Alphafold Predictions?

Bio Structural Biology Alphafold Predictions fits situations like: predicted structures are needed for proteins without experimental structures; for confidence scores (pLDDT).

How do I install Bio Structural Biology Alphafold Predictions in Claude Code?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-structural-biology-alphafold-predictions -a claude-code`. Or copy the skill folder (skills/bio-structural-biology-alphafold-predictions in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-structural-biology-alphafold-predictions in your project. Claude Code loads it when a task matches its description.

How do I install Bio Structural Biology Alphafold Predictions in Codex?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-structural-biology-alphafold-predictions -a codex`. Or copy the skill folder (skills/bio-structural-biology-alphafold-predictions in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-structural-biology-alphafold-predictions in your project. Codex loads it when a task matches its description.

Can I use Bio Structural Biology Alphafold Predictions in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-structural-biology-alphafold-predictions -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-structural-biology-alphafold-predictions, .gemini/skills/bio-structural-biology-alphafold-predictions, .github/skills/bio-structural-biology-alphafold-predictions and .opencode/skills/bio-structural-biology-alphafold-predictions in your project.

What does Bio Structural Biology Alphafold Predictions need to run?

Going by SKILL.md and its folder, Bio Structural Biology Alphafold Predictions needs Python for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.

Does Bio Structural Biology Alphafold Predictions access the network?

SKILL.md names 1 domain. In commands or code: alphafold.ebi.ac.uk; the agent is likely to contact it when it follows the instructions. This is read from the text; nothing was executed.

Is Bio Structural Biology Alphafold Predictions safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Bio Structural Biology Alphafold Predictions use?

No licence was found for Bio Structural Biology Alphafold Predictions or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Bio Structural Biology Alphafold Predictions use?

About 2.1k tokens (SKILL.md is roughly 8.5k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Bio Structural Biology Alphafold Predictions?

Skills that share tags, products or a category with Bio Structural Biology Alphafold Predictions: Alphafold Database Fetch And Analyze (google-deepmind/science-skills, 3.2k stars), Bio DB Tools (DrugClaw/DrugClaw, 126 stars), Gget (davila7/claude-code-templates, 33k stars) and Alphafold Database (davila7/claude-code-templates, 33k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Bio Structural Biology Alphafold Predictions?

FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.

Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.