Agent skill
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill mcpmed-bioinformatics-server -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills mcpmed-bioinformatics-server --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/mcpmed-bioinformatics-server .claude/skills/mcpmed-bioinformatics-server && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "mcpmed-bioinformatics-server" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/mcpmed-bioinformatics-server into .claude/skills/mcpmed-bioinformatics-server/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mcpmed-bioinformatics-server", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/mcpmed-bioinformatics-serverType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill mcpmed-bioinformatics-server -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills mcpmed-bioinformatics-server --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/mcpmed-bioinformatics-server .agents/skills/mcpmed-bioinformatics-server && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "mcpmed-bioinformatics-server" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/mcpmed-bioinformatics-server into .agents/skills/mcpmed-bioinformatics-server/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mcpmed-bioinformatics-server", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill mcpmed-bioinformatics-server -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills mcpmed-bioinformatics-server --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/mcpmed-bioinformatics-server .cursor/skills/mcpmed-bioinformatics-server && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "mcpmed-bioinformatics-server" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/mcpmed-bioinformatics-server into .cursor/skills/mcpmed-bioinformatics-server/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mcpmed-bioinformatics-server", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/mcpmed-bioinformatics-server--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill mcpmed-bioinformatics-server -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills mcpmed-bioinformatics-server --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/mcpmed-bioinformatics-server .gemini/skills/mcpmed-bioinformatics-server && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "mcpmed-bioinformatics-server" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/mcpmed-bioinformatics-server into .gemini/skills/mcpmed-bioinformatics-server/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mcpmed-bioinformatics-server", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills mcpmed-bioinformatics-serverInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill mcpmed-bioinformatics-server -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/mcpmed-bioinformatics-server .github/skills/mcpmed-bioinformatics-server && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "mcpmed-bioinformatics-server" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/mcpmed-bioinformatics-server into .github/skills/mcpmed-bioinformatics-server/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mcpmed-bioinformatics-server", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill mcpmed-bioinformatics-server -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills mcpmed-bioinformatics-server --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/mcpmed-bioinformatics-server .opencode/skills/mcpmed-bioinformatics-server && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "mcpmed-bioinformatics-server" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/mcpmed-bioinformatics-server into .opencode/skills/mcpmed-bioinformatics-server/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mcpmed-bioinformatics-server", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
mcpmed-bioinformatics-serverModel Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.
Mcpmed Bioinformatics Server is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.
Its SKILL.md is about 350 tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts. Compatibility notes: [{"system":"Python 3.10+"}]
It sits in Research & Science, covering Bioinformatics and MCP servers. It works with Model Context Protocol. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞. The licence is MIT.
3 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Pre-approves these tools, so the agent can use them without asking each time:
run_shell_commandFrom allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
python3From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
[{"system":"Python 3.10+"}]
From compatibility in the SKILL.md frontmatter.
Mcpmed Bioinformatics Server loads about 353 tokens when it runs. Until then it costs about 34 tokens; SKILL.md has 135 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from FreedomIntelligence/OpenClaw-Medical-Skills at commit b1f9b6e, republished under its MIT licence (© FreedomIntelligence). 135 words, ~353 tokens.
.claude/skills/mcpmed-bioinformatics-server/SKILL.md (or your agent's skills folder).Adapts the Model Context Protocol (MCP) to bioinformatics web server backends. This creates a standardized, machine-actionable layer for LLMs to interact with external biological resources, matching the 2026 standard for agentic tools.
User: "Query the STRING database for interactions with TP53."
Agent Action:
python3 -m mcpmed.cli query string --gene TP53© FreedomIntelligence, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in skills/mcpmed-bioinformatics-server of FreedomIntelligence/OpenClaw-Medical-Skills.
Open the folder on GitHubat commit b1f9b6e
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.
Mcpmed Bioinformatics Server next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Mcpmed Bioinformatics Server this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~353 | Automated safety check: Pass | MIT | |
| Hcls Build Agentaws-samples/amazon-bedrock-agents-healthcare-lifesciences | 274 | — | ~885 | Automated safety check: Pass | MIT-0 | |
| Genomic IntelligenceK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~6.2k | Automated safety check: Notes | MIT | |
| Research Biomedical Databasesaws-samples/amazon-bedrock-agents-healthcare-lifesciences | 274 | — | ~3.1k | Automated safety check: Pass | MIT-0 | |
| Bioqc MCPClawBio/ClawBio | 1.2k | — | ~2.2k | Automated safety check: Pass | MIT | |
| Read GitHubAgentTeam-TaichuAI/ScienceClaw | 671 | 2 repos | ~638 | Automated safety check: Pass | None |
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
A skill your agent uses when a developer wants to build a new healthcare or life sciences agent, structure tools and system prompts for an HCLS workflow, or create a Strands agent with…
K-Dense-AI/scientific-agent-skills
Predicts regulatory features, gene structure, and expression directly from DNA sequence using Genomic Intelligence's hosted transformer DNA language models — no local GPU or model weights.
aws-samples/amazon-bedrock-agents-healthcare-lifesciences
A skill your agent uses when querying biomedical databases (UniProt, ClinVar, gnomAD, PDB, Reactome, Open Targets, etc.) via the Biomni AgentCore Gateway MCP server.
ClawBio/ClawBio
Automated sequencing quality control and advanced visualization wrapping FastQC, MultiQC, and custom chart generation.
AgentTeam-TaichuAI/ScienceClaw
Read and search GitHub repository documentation via gitmcp.io MCP service.
MLT-OSS/FirstData
Find official portals, APIs, and download paths for authoritative primary data sources (governments, international organizations, research institutions, etc.).
FreedomIntelligence/OpenClaw-Medical-Skills
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.
FreedomIntelligence/OpenClaw-Medical-Skills
Select and apply numerical differentiation schemes for PDE/ODE discretization.
FreedomIntelligence/OpenClaw-Medical-Skills
FHIR API development guide for building healthcare endpoints.
FreedomIntelligence/OpenClaw-Medical-Skills
Select and configure linear solvers for systems Ax=b in dense and sparse problems.
FreedomIntelligence/OpenClaw-Medical-Skills
Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research.
FreedomIntelligence/OpenClaw-Medical-Skills
Plan and evaluate mesh generation for numerical simulations.
Works with
Categories
Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser. Mcpmed Bioinformatics Server is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.
Mcpmed Bioinformatics Server fits situations like: tasks that involve Bioinformatics; tasks that involve MCP servers.
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill mcpmed-bioinformatics-server -a claude-code`. Or copy the skill folder (skills/mcpmed-bioinformatics-server in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/mcpmed-bioinformatics-server in your project. Claude Code loads it when a task matches its description.
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill mcpmed-bioinformatics-server -a codex`. Or copy the skill folder (skills/mcpmed-bioinformatics-server in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/mcpmed-bioinformatics-server in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill mcpmed-bioinformatics-server -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/mcpmed-bioinformatics-server, .gemini/skills/mcpmed-bioinformatics-server, .github/skills/mcpmed-bioinformatics-server and .opencode/skills/mcpmed-bioinformatics-server in your project.
Going by SKILL.md and its folder, Mcpmed Bioinformatics Server needs the command-line tools its instructions call (python3). Our summary lists: Python 3. Its frontmatter pre-approves these tools: run_shell_command. Compatibility (from SKILL.md): [{"system":"Python 3.10+"}].
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Mcpmed Bioinformatics Server is published under the MIT licence (declared in SKILL.md). It allows redistribution, so the full SKILL.md is shown on this page.
About 353 tokens (SKILL.md is roughly 1.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Mcpmed Bioinformatics Server: Hcls Build Agent (aws-samples/amazon-bedrock-agents-healthcare-lifesciences, 274 stars), Genomic Intelligence (K-Dense-AI/scientific-agent-skills, 48k stars), Research Biomedical Databases (aws-samples/amazon-bedrock-agents-healthcare-lifesciences, 274 stars) and Bioqc MCP (ClawBio/ClawBio, 1.2k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.
