Agent skill
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Estimate causal effects between exposures and outcomes using genetic variants as instrumental variables with TwoSampleMR.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-causal-genomics-mendelian-randomization -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-causal-genomics-mendelian-randomization --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-causal-genomics-mendelian-randomization .claude/skills/bio-causal-genomics-mendelian-randomization && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-causal-genomics-mendelian-randomization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-causal-genomics-mendelian-randomization into .claude/skills/bio-causal-genomics-mendelian-randomization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-causal-genomics-mendelian-randomization", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-causal-genomics-mendelian-randomizationType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-causal-genomics-mendelian-randomization -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-causal-genomics-mendelian-randomization --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-causal-genomics-mendelian-randomization .agents/skills/bio-causal-genomics-mendelian-randomization && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-causal-genomics-mendelian-randomization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-causal-genomics-mendelian-randomization into .agents/skills/bio-causal-genomics-mendelian-randomization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-causal-genomics-mendelian-randomization", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-causal-genomics-mendelian-randomization -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-causal-genomics-mendelian-randomization --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-causal-genomics-mendelian-randomization .cursor/skills/bio-causal-genomics-mendelian-randomization && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-causal-genomics-mendelian-randomization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-causal-genomics-mendelian-randomization into .cursor/skills/bio-causal-genomics-mendelian-randomization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-causal-genomics-mendelian-randomization", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-causal-genomics-mendelian-randomization--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-causal-genomics-mendelian-randomization -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-causal-genomics-mendelian-randomization --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-causal-genomics-mendelian-randomization .gemini/skills/bio-causal-genomics-mendelian-randomization && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-causal-genomics-mendelian-randomization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-causal-genomics-mendelian-randomization into .gemini/skills/bio-causal-genomics-mendelian-randomization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-causal-genomics-mendelian-randomization", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-causal-genomics-mendelian-randomizationInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-causal-genomics-mendelian-randomization -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-causal-genomics-mendelian-randomization .github/skills/bio-causal-genomics-mendelian-randomization && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-causal-genomics-mendelian-randomization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-causal-genomics-mendelian-randomization into .github/skills/bio-causal-genomics-mendelian-randomization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-causal-genomics-mendelian-randomization", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-causal-genomics-mendelian-randomization -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-causal-genomics-mendelian-randomization --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-causal-genomics-mendelian-randomization .opencode/skills/bio-causal-genomics-mendelian-randomization && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-causal-genomics-mendelian-randomization" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-causal-genomics-mendelian-randomization into .opencode/skills/bio-causal-genomics-mendelian-randomization/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-causal-genomics-mendelian-randomization", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
bio-causal-genomics-mendelian-randomizationEstimate causal effects between exposures and outcomes using genetic variants as instrumental variables with TwoSampleMR.
Bio Causal Genomics Mendelian Randomization is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Estimate causal effects between exposures and outcomes using genetic variants as instrumental variables with TwoSampleMR. Implements IVW, MR-Egger, weighted median, and MR-PRESSO methods for robust causal inference from GWAS summary statistics. Use when testing whether an exposure causally affects an outcome using genetic instruments.
Its SKILL.md is about 2.2k tokens, which your agent loads only when the skill is triggered. The skill folder holds 4 other files (for example `usage-guide.md`).
It sits in Research & Science, covering Econometrics and empirical research, Data analysis and Bioinformatics. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
3 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Ships script files (R), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
Hosts in commands or code, which the agent is likely to contact:
shiny.cnsgenomics.comAlso links to:
github.comFrom URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Bio Causal Genomics Mendelian Randomization loads about 2.2k tokens when it runs. Until then it costs about 95 tokens; SKILL.md has 450 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
Without a licence we can't republish the file, so here is its outline and opening line. It has 450 words (~2,181 tokens).
“Reference examples tested with: TwoSampleMR 0.5+, MendelianRandomization 0.9+”
SKILL.md and 3 other files in skills/bio-causal-genomics-mendelian-randomization of FreedomIntelligence/OpenClaw-Medical-Skills.
Open the folder on GitHubat commit b1f9b6e
Bio Causal Genomics Mendelian Randomization next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Causal Genomics Mendelian Randomization this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | — | ~2.2k | Automated safety check: Pass | None | |
| Bio Workflows Causal Genomics PipelineGPTomics/bioSkills | 1.2k | 2 repos | ~5.5k | Automated safety check: Pass | MIT | |
| Bidirectional Multi Phenotype Mr Research Planneraipoch/medical-research-skills | 1.9k | — | ~4.4k | Automated safety check: Pass | MIT | |
| Scanpy Single-Cell Analysisdavila7/claude-code-templates | 33k | 15 repos | ~2.8k | Automated safety check: Pass | MIT | |
| Single-Cell Initial AnalysisLigphiDonk/Oh-my--paper | 739 | 1 repos | ~1.4k | Automated safety check: Pass | MIT | |
| Ukb Ppp Region FetchClawBio/ClawBio | 1.2k | — | ~4.6k | Automated safety check: Pass | MIT |
GPTomics/bioSkills
End-to-end post-GWAS causal inference pipeline orchestrating heritability partitioning, genetic correlation, Mendelian randomization with CHP-aware sensitivity (CAUSE / LHC-MR), colocalization…
aipoch/medical-research-skills
Generates complete bidirectional multi-phenotype Mendelian randomization research designs from a user-provided exposure family and outcome family.
davila7/claude-code-templates
Walks through single-cell RNA-seq analysis with Scanpy: loading .h5ad and 10X data, QC, normalization, PCA and UMAP, Leiden clustering, marker genes and cell type annotation.
LigphiDonk/Oh-my--paper
Runs a seven-step quality-control and exploration pipeline on scRNA-seq, CyTOF or flow cytometry data and writes a plain-language report of what it found.
ClawBio/ClawBio
Fetch a regional slice of plasma pQTL summary statistics from the UK Biobank Pharma Proteomics Project (UKB-PPP; Sun 2023 Nature) for a specific (protein, ancestry) measurement.
ClawBio/ClawBio
End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association testing.
FreedomIntelligence/OpenClaw-Medical-Skills
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.
FreedomIntelligence/OpenClaw-Medical-Skills
Select and apply numerical differentiation schemes for PDE/ODE discretization.
FreedomIntelligence/OpenClaw-Medical-Skills
FHIR API development guide for building healthcare endpoints.
FreedomIntelligence/OpenClaw-Medical-Skills
Select and configure linear solvers for systems Ax=b in dense and sparse problems.
FreedomIntelligence/OpenClaw-Medical-Skills
Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research.
FreedomIntelligence/OpenClaw-Medical-Skills
Plan and evaluate mesh generation for numerical simulations.
Categories
Estimate causal effects between exposures and outcomes using genetic variants as instrumental variables with TwoSampleMR. Bio Causal Genomics Mendelian Randomization is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Estimate causal effects between exposures and outcomes using genetic variants as instrumental variables with TwoSampleMR.
Bio Causal Genomics Mendelian Randomization fits situations like: testing whether an exposure causally affects an outcome using genetic instruments; tasks that involve Econometrics and empirical research; tasks that involve Data analysis.
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-causal-genomics-mendelian-randomization -a claude-code`. Or copy the skill folder (skills/bio-causal-genomics-mendelian-randomization in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-causal-genomics-mendelian-randomization in your project. Claude Code loads it when a task matches its description.
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-causal-genomics-mendelian-randomization -a codex`. Or copy the skill folder (skills/bio-causal-genomics-mendelian-randomization in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-causal-genomics-mendelian-randomization in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-causal-genomics-mendelian-randomization -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-causal-genomics-mendelian-randomization, .gemini/skills/bio-causal-genomics-mendelian-randomization, .github/skills/bio-causal-genomics-mendelian-randomization and .opencode/skills/bio-causal-genomics-mendelian-randomization in your project.
Going by SKILL.md and its folder, Bio Causal Genomics Mendelian Randomization needs R for the scripts in its folder.
SKILL.md names 2 domains. In commands or code: shiny.cnsgenomics.com; the agent is likely to contact it when it follows the instructions. As links in the text: github.com. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
No licence was found for Bio Causal Genomics Mendelian Randomization or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
About 2.2k tokens (SKILL.md is roughly 8.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Bio Causal Genomics Mendelian Randomization: Bio Workflows Causal Genomics Pipeline (GPTomics/bioSkills, 1.2k stars), Bidirectional Multi Phenotype Mr Research Planner (aipoch/medical-research-skills, 1.9k stars), Scanpy Single-Cell Analysis (davila7/claude-code-templates, 33k stars) and Single-Cell Initial Analysis (LigphiDonk/Oh-my--paper, 739 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.
