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By FreedomIntelligence
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Select and apply numerical differentiation schemes for PDE/ODE discretization. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Notes | No licence | 2 mo ago |
| 2 | Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 3 | Plan and evaluate mesh generation for numerical simulations. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.1k | Automated safety check: Notes | No licence | 2 mo ago |
| 4 | Select and configure time integration methods for ODE/PDE simulations. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Notes | No licence | 2 mo ago |
| 5 | Parse, navigate, and query materials science ontology structure (classes, properties, hierarchy). | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Notes | No licence | 2 mo ago |
| 6 | Map materials science terms, crystal structures, and sample descriptions to ontology classes and properties. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Notes | No licence | 2 mo ago |
| 7 | Validate material sample annotations and data structures against ontology constraints. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Notes | No licence | 2 mo ago |
| 8 | Identify computational bottlenecks, analyze scaling behavior, estimate memory requirements, and receive optimization recommendations for any computational simulation. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Notes | No licence | 2 mo ago |
| 9 | Extract, analyze, and visualize simulation output data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Notes | No licence | 2 mo ago |
| 10 | Orchestrate multi-simulation campaigns including parameter sweeps, batch jobs, and result aggregation. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Notes | No licence | 2 mo ago |
| 11 | Validate simulations before, during, and after execution. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Notes | No licence | 2 mo ago |
| 12 | Generate SLURM sbatch job scripts and sanity-check HPC resource requests (nodes, tasks, CPUs, memory, GPUs) for simulation runs. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Notes | No licence | 2 mo ago |
| 13 | Plan and control time-step policies for simulations. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.1k | Automated safety check: Notes | No licence | 2 mo ago |
| 14 | Run bioinformatics analyses using Lobster AI - single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization. | FreedomIntelligence/ | 3.1k | 2 repos | ~2.5k | Automated safety check: Notes | No licence | 2 mo ago |
| 15 | Analyze protein-protein interaction networks using STRING, BioGRID, and SASBDB databases. | FreedomIntelligence/ | 3.1k | 2 repos | ~3.7k | Automated safety check: Notes | No licence | 2 mo ago |
| 16 | Automate payer review of prior authorization (PA) requests. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~3.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 17 | Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 18 | Process multiple sequence files in batch using Biopython. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 19 | Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 20 | Read and write compressed sequence files (gzip, bzip2, BGZF) using Biopython. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 21 | Generate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 22 | Detects somatic mutations in circulating tumor DNA using variant callers optimized for low allele fractions with UMI-based error suppression. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 23 | Perform differential expression analysis using DESeq2 in R/Bioconductor. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 24 | Visualize differential expression results using DESeq2/edgeR built-in functions. | FreedomIntelligence/ | 3.1k | 1 repo | ~3k | Automated safety check: Pass | No licence | 2 mo ago |
| 25 | Detect and track antimicrobial resistance genes using AMRFinderPlus and ResFinder with epidemiological context. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 26 | Construct time-scaled phylogenies and infer evolutionary dynamics using TreeTime and BEAST2 for outbreak analysis. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 27 | Infer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 28 | Assign pathogen lineages and track variants using Nextclade and pangolin for viral surveillance. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 29 | Filter and select sequences by criteria (length, ID, GC content, patterns) using Biopython. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 30 | Bead-based normalization for CyTOF and high-parameter flow cytometry. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 31 | Unsupervised clustering and cell type identification for flow/mass cytometry. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 32 | Spillover compensation and data transformation for flow cytometry. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 33 | Detect and remove doublets from flow and mass cytometry data. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 34 | Read and manipulate Flow Cytometry Standard (FCS) files. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 35 | Convert between sequence file formats (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 36 | Analyzes cfDNA fragment size distributions and fragmentomics features using FinaleToolkit or Griffin. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 37 | Design guides for cytosine and adenine base editing using editing window optimization and BE-Hive outcome prediction. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 38 | Design guide RNAs for CRISPR-Cas9/Cas12a experiments using CRISPRscan and local scoring algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 39 | Design homology-directed repair donor templates for CRISPR knock-ins using primer3-py. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 40 | Predict CRISPR off-target sites using Cas-OFFinder and CFD scoring algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 41 | Design pegRNAs for prime editing using PrimeDesign algorithms. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 42 | Process Hi-C read pairs using pairtools. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 43 | Load, convert, and manipulate Hi-C contact matrices using cooler format. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 44 | Compare Hi-C contact matrices between conditions to identify differential chromatin interactions. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 45 | Visualize Hi-C contact matrices, TADs, loops, and genomic features using matplotlib, cooltools, and HiCExplorer. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 46 | Detect chromatin loops and point interactions from Hi-C data using cooltools, chromosight, and HiCCUPS-like methods. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 47 | Balance, normalize, and transform Hi-C contact matrices using cooler and cooltools. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 48 | Call topologically associating domains (TADs) from Hi-C data using insulation score, HiCExplorer, and other methods. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
