Best agent skills for researchers, page 10

Step 2 of the PaperOrchestra pipeline (arXiv:2604.05018). An agent skill from Ar9av/PaperOrchestra.

Ar9av/PaperOrchestra

Build and query embedded GraphRAG knowledge graphs with DuckDB-backed vector, full-text, and hybrid search.

bradAGI/GraphMemory

Feishu knowledge base navigation. An agent skill from raucvr/Group-Goki.

raucvr/Group-Goki

Builds a local architecture wiki for a repository from the CodexQA symbol graph (no model needed): modules, who calls whom and how often, reading paths, and one self-contained HTML page.

openqa-cn/codexqa

Project knowledge base and workflow router. An agent skill from kingkongshot/Pensieve.

kingkongshot/Pensieve

Extract transcripts from YouTube videos via the YouTube caption system

axoviq-ai/synthadoc

Read, create, find, and cite Octo summaries through octo-cli.

Mininglamp-OSS/octo-cli

Finds papers across literature sources, verifies and converts citations, builds MeSH strategies and audits independent citations of a paper.

Yuan1z0825/nature-skills

Produces a structured peer-review style critique of a research paper, covering methodology, contribution and how the work sits among related studies.

bytedance/deer-flow

Search the web, extract URL content, and run deep research using the Parallel Chat API and Extract API.

LeonChaoX/qinyan-academic-skills

All-atom protein design using BoltzGen diffusion model. An agent skill from adaptyvbio/protein-design-skills.

adaptyvbio/protein-design-skills

Multi-source literature search, citation verification, MeSH search strategy, citation file management (.nbib/.ris/.bib conversion), and reference management (BibTeX, related articles, ID conversion)…

jing1312/nature-figure-skill

Auto-activate when the user mentions NGLess, ngless, NGS processing, metagenomics pipelines with NGLess, writing .ngl scripts, or is working in the ngless repository (Rust source at src/).

ngless-toolkit/ngless

论文全流程辅助: 8源检索、综述生成、查重预检、降AI率、参考文献格式化、Word导出. An agent skill from Jesseovo/PaperCash.

Jesseovo/PaperCash

Propagate the Bactopia and nf-bactopia versions declared in versions.yml into the hand-maintained files that carry a literal version (conf/testbase.config, CITATION.cff, bin/bactopia…

bactopia/bactopia

Generates and updates README.md and API reference docs by reading your codebase's functions, routes, types, schemas, and architecture.

Varnan-Tech/opendirectory

Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC.

K-Dense-AI/claude-scientific-writer

How to work in a Codebase Wiki project (the codebase-wiki starter pack): an agent-authored, source-grounded wiki of the surrounding codebase.

inkeep/open-knowledge

Query the user's LLM Wiki knowledge base (the LLM Wiki desktop app at 127.0.0.1:19828 — NOT Obsidian, Notion, Apple Notes, Logseq, or any other PKM tool).

nashsu/llm_wiki_skill

Researches what people are saying about a topic over a recent window across X, Reddit, YouTube and the public web, reporting each source's status with links.

imraywang/rayskills

Guides research paper writing with a five-stage pipeline, editorial and voice rules from a systems lab, and per-paper context, from brainstorming to compression.

SNL-UCSB/paper-writing-skill

Health-check a research directory produced by /research. An agent skill from iusztinpaul/ai-research-os-workshop.

iusztinpaul/ai-research-os-workshop

Compute and interpret a Western tropical natal chart (birth chart / natal chart / 本命盘 / 星盘) from birth datetime and location.

shizhilya/yuan

Retrieves chemical compound information from PubChem and ChEMBL with disambiguation, cross-referencing, and quality assessment.

wu-yc/LabClaw

读取调研outline，为每个item启动独立agent进行深度调研。禁用task output. An agent skill from Weizhena/Deep-Research-skills.

Weizhena/Deep-Research-skills

Plans, drafts, audits, formats and verifies a formal mathematical-modeling paper from an evidence chain, delivering audited Markdown and a Word file with native equations.

yushui2022/MathModel-Skill

A skill your agent uses when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).

google-deepmind/science-skills

Quantum physics simulation library for open quantum systems.

zLanqing/codex-claude-academic-skills

Turns your CSV or Excel data and a plain-language request into a publication-style scientific chart by adapting a catalog template, then checks and repairs it.

hrdZhu/modelviz-skill

A skill your agent uses when a researcher needs to query biomedical databases for biomarker discovery, build target profiles from UniProt/Open Targets/STRING, rank biomarker candidates by evidence…

aws-samples/amazon-bedrock-agents-healthcare-lifesciences

Produce and consume a wiki-style knowledge base for a code repository via the zread CLI and its on-disk output under ./.zread/wiki/.

ZreadAI/zread-skill

Author, resolve, compile and publish a just-dna annotation module — the spec directory layout, the CSV column contracts and vocabularies, the enrich→compile pipeline, and the checks that decide…

dna-seq/just-dna-lite

Query, manage, and automate Google NotebookLM from your AI agent.

robonuggets/notebooklm-skill

学术论文打假检测器，致敬耿同学。分析学术论文 PDF，检测数据造假、图片复用/拼接、Western blot 操纵、统计异常等学术不端行为。当用户提供论文 PDF 要求"查重"、"打假"、"检测造假"、"论文分析"、"学术打假"时使用。

wooly99/geng-academic-fraud-detector

Full-featured CLI for Zotero reference management. An agent skill from PiaoyangGuohai1/cli-anything-zotero.

PiaoyangGuohai1/cli-anything-zotero

Internal fetcher module for Confluence pages. An agent skill from iurykrieger/claude-bedrock.

iurykrieger/claude-bedrock

Analyzes arXiv papers, PDFs, project pages and blogs and writes an evidence-backed Obsidian note with images and a knowledge-graph entry.

juliye2025/evil-read-arxiv

Conduct comprehensive deep research on any topic using Dify-powered workflow - searches documentation, academic papers, tutorials, APIs, best practices, and returns structured analysis with insights.

21pounder/terminalAgent

Builds and maintains a persistent, interlinked Obsidian-compatible markdown knowledge wiki in a git repo via three operations — ingest a source into linked pages, answer a question from the…

CharlesHoskinson/sevenlayer

A skill your agent uses when analyzing the server/desktop backend bundle — "what does the server load at startup?", "is <dependency lazy on the backend?", "why is <package in the startup set?", "how…

TriliumNext/Trilium

股票投资调研问题细化技能。将用户提供的股票名称/代码细化为结构化的8阶段投资尽调指令。通过提问澄清投资风格（价值/成长/困境反转）、持有周期（短/中/长线）、风险偏好、研究重点，生成符合专业投资研究标准的结构化调研任务。当用户提到股票分析、投资研究、股票尽调时使用此技能。

liangdabiao/Claude-Code-Stock-Deep-Research-Agent

Comprehensive research agent for in-depth investigation. An agent skill from shobcoder/shob.

shobcoder/shob

Query Google NotebookLM notebooks for source-grounded, citation-backed answers from user-uploaded documents.

AgriciDaniel/claude-blog

Access academic papers (arXiv, PMC, bioRxiv, medRxiv) via CLI with semantic search and intelligent content extraction

DeepXiv/deepxiv_sdk

Collect, interpret, and troubleshoot db-sync server usage stats (total users/graphs, active users/graphs in N days, created-today metrics) using the deps/db-sync scripts and D1 schema.

logseq/logseq

Convert academic papers (PDF) into conference posters (HTML/PNG).

QuZhan51496/paper2anything

Writes statistical analysis code for experimental data, runs it through a four-round review, and reports effect sizes, p-values and confidence intervals.

lingzhi227/agent-research-skills

Specialized workflows for drafting, refining, and responding to academic literature reviews and peer review feedback.

ShZhao27208/Aut_Sci_Write