Repository
adaptyvbio/protein-design-skills agent skills
- skills
- 24
- GitHub stars
- 164
GitHub description: “Claude Code skills for protein design”
- Stars
- 164 (21 forks)
- Licence
- MIT
- Last push
- Jun 2026
- Created
- Jan 2026
- agent-skills
- claude-code
- protein-design
- protein-engineering
Install all skills
npx skills add adaptyvbio/protein-design-skillsAdd --skill <name> for a single skill and -a <agent> to choose the agent (see the agent guides).
Skills in adaptyvbio/protein-design-skills, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Validate protein designs using AlphaFold2 structure prediction. | adaptyvbio/ | 164 | 3 repos | ~1.2k | Automated safety check: Pass | MIT | 4 mo ago |
| 2 | End-to-end binder design using BindCraft hallucination. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.3k | Automated safety check: Pass | MIT | 4 mo ago |
| 3 | Guidance for choosing the right protein binder design tool. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.8k | Automated safety check: Pass | MIT | 4 mo ago |
| 4 | 4.Boltzgen All-atom protein design using BoltzGen diffusion model. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~2k | Automated safety check: Pass | MIT | 4 mo ago |
| 5 | 5.Chai Structure prediction using Chai-1, a foundation model for molecular structure. | adaptyvbio/ | 164 | 3 repos | ~1.5k | Automated safety check: Pass | MIT | 4 mo ago |
| 6 | End-to-end guidance for protein design pipelines. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.2k | Automated safety check: Pass | MIT | 4 mo ago |
| 7 | Quality control metrics and filtering thresholds for protein design. | adaptyvbio/ | 164 | 3 repos | ~3.2k | Automated safety check: Pass | MIT | 4 mo ago |
| 8 | Design protein sequences using ProteinMPNN inverse folding. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.8k | Automated safety check: Pass | MIT | 4 mo ago |
| 9 | Generate protein backbones using RFdiffusion, a diffusion-based generative model for de novo protein structure generation. | adaptyvbio/ | 164 | 3 repos | ~2.3k | Automated safety check: Pass | MIT | 4 mo ago |
| 10 | 10.Boltz Structure prediction using Boltz-1/Boltz-2, an open biomolecular structure predictor. | adaptyvbio/ | 164 | 3 repos | ~1.3k | Automated safety check: Pass | MIT | 4 mo ago |
| 11 | Guidance for cell-free protein synthesis (CFPS) optimization. | adaptyvbio/ | 164 | 3 repos | ~2.8k | Automated safety check: Pass | MIT | 4 mo ago |
| 12 | 12.Foldseek Structure similarity search with Foldseek. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.1k | Automated safety check: Pass | MIT | 4 mo ago |
| 13 | 13.Ipsae Binder design ranking using ipSAE (interprotein Score from Aligned Errors). | adaptyvbio/ | 164 | 3 repos | ~1.2k | Automated safety check: Pass | MIT | 4 mo ago |
| 14 | 14.Ligandmpnn Ligand-aware protein sequence design using LigandMPNN. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.2k | Automated safety check: Pass | MIT | 4 mo ago |
| 15 | 15.Pdb Fetch and analyze protein structures from RCSB PDB. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 3 repos | ~1.4k | Automated safety check: Pass | MIT | 4 mo ago |
| 16 | 16.Solublempnn Solubility-optimized protein sequence design using SolubleMPNN. | adaptyvbio/ | 164 | 3 repos | ~1.1k | Automated safety check: Pass | MIT | 4 mo ago |
| 17 | Goal-oriented binder design campaign planning and health assessment. | adaptyvbio/ | 164 | 2 repos | ~1.8k | Automated safety check: Pass | MIT | 4 mo ago |
| 18 | 18.Setup First-time setup for protein design tools. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 2 repos | ~896 | Automated safety check: Pass | MIT | 4 mo ago |
| 19 | 19.Uniprot Access UniProt for protein sequence and annotation retrieval. | adaptyvbio/ | 164 | 2 repos | ~1.3k | Automated safety check: Pass | MIT | 4 mo ago |
| 20 | Guidance for SPR and BLI binding characterization experiments. | adaptyvbio/ | 164 | 3 repos | ~2.2k | Automated safety check: Pass | MIT | 4 mo ago |
| 21 | 21.Germinal De novo antibody and nanobody (VHH) design with Germinal. An agent skill from adaptyvbio/protein-design-skills. | adaptyvbio/ | 164 | 1 repo | ~739 | Automated safety check: Pass | MIT | 4 mo ago |
| 22 | 22.Mosaic Multi-objective, gradient-based protein binder design with Mosaic. | adaptyvbio/ | 164 | 1 repo | ~1.7k | Automated safety check: Pass | MIT | 4 mo ago |
| 23 | 23.Protenix Structure prediction with Protenix, an open AlphaFold3 reproduction. | adaptyvbio/ | 164 | 1 repo | ~695 | Automated safety check: Pass | MIT | 4 mo ago |
| 24 | 24.Esm ESM protein language models for embeddings, sequence scoring, structure prediction, and binder design. | adaptyvbio/ | 164 | — | ~2k | Automated safety check: Pass | MIT | 4 mo ago |
Questions, answered from the data.
What is the best skill in adaptyvbio/protein-design-skills?
Alphafold from adaptyvbio/protein-design-skills ranks first of the 24 skills in adaptyvbio/protein-design-skills listed here, with the highest score: its repository has 164 GitHub stars, 3 other GitHub owners carry a copy, its SKILL.md loads about 1.2k tokens and it passes the automated safety check with no findings. Next come Bindcraft and Binder Design.
Are the skills in adaptyvbio/protein-design-skills official?
None yet. All 24 skills in adaptyvbio/protein-design-skills listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How do I install all skills from adaptyvbio/protein-design-skills?
Run npx skills add adaptyvbio/protein-design-skills in your project: the open-source skills CLI installs the repository's skills into your coding agent's skills folder. To install a single skill, open its page here for the exact command.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.