Bio Ensembl REST
GPTomics/bioSkills
Query the Ensembl REST API for gene/transcript/protein lookup, sequence retrieval, comparative genomics (Compara), variant effect prediction (VEP), regulatory features, and cross-species…
Agent skill
Bio Clinical Databases Clinvar Lookup
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF.
Install Bio Clinical Databases Clinvar Lookup
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-clinvar-lookup -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-clinvar-lookup --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-clinical-databases-clinvar-lookup .claude/skills/bio-clinical-databases-clinvar-lookup && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-clinical-databases-clinvar-lookup" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-clinvar-lookup into .claude/skills/bio-clinical-databases-clinvar-lookup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-clinvar-lookup", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-clinvar-lookupType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-clinvar-lookup -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-clinvar-lookup --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-clinical-databases-clinvar-lookup .agents/skills/bio-clinical-databases-clinvar-lookup && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-clinical-databases-clinvar-lookup" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-clinvar-lookup into .agents/skills/bio-clinical-databases-clinvar-lookup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-clinvar-lookup", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-clinvar-lookup -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-clinvar-lookup --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-clinical-databases-clinvar-lookup .cursor/skills/bio-clinical-databases-clinvar-lookup && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-clinical-databases-clinvar-lookup" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-clinvar-lookup into .cursor/skills/bio-clinical-databases-clinvar-lookup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-clinvar-lookup", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-clinical-databases-clinvar-lookup--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-clinvar-lookup -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-clinvar-lookup --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-clinical-databases-clinvar-lookup .gemini/skills/bio-clinical-databases-clinvar-lookup && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-clinical-databases-clinvar-lookup" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-clinvar-lookup into .gemini/skills/bio-clinical-databases-clinvar-lookup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-clinvar-lookup", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-clinvar-lookupInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-clinvar-lookup -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-clinical-databases-clinvar-lookup .github/skills/bio-clinical-databases-clinvar-lookup && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-clinical-databases-clinvar-lookup" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-clinvar-lookup into .github/skills/bio-clinical-databases-clinvar-lookup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-clinvar-lookup", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-clinvar-lookup -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-clinical-databases-clinvar-lookup --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-clinical-databases-clinvar-lookup .opencode/skills/bio-clinical-databases-clinvar-lookup && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-clinical-databases-clinvar-lookup" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-clinical-databases-clinvar-lookup into .opencode/skills/bio-clinical-databases-clinvar-lookup/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-clinical-databases-clinvar-lookup", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-clinical-databases-clinvar-lookup- GitHub stars
- 3.1k
- Token cost
- ~1.4k tokens
- SKILL.md length
- 307 words
- Files
- 3
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF.
- Determining clinical significance of variants for diagnostic
- SKILL.md covers Version Compatibility, REST API Queries, Local ClinVar VCF and Clinical Significance Categories, plus 4 more sections
- Runs Python scripts from its folder; calls wget and pip; reaches eutils.ncbi.nlm.nih.gov and ftp.ncbi.nlm.nih.gov
- Research purposes
What it does
Bio Clinical Databases Clinvar Lookup is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. Use when determining clinical significance of variants for diagnostic or research purposes.
Its SKILL.md is about 1.4k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/clinvar_query.py` and `usage-guide.md`).
It sits in Backend & APIs, covering REST APIs. It works with NCBI. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Determining clinical significance of variants for diagnostic
- Research purposes
Example prompts
- “/bio-clinical-databases-clinvar-lookup”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (Python), which the agent can run.
Shell commands in SKILL.md call:
wgetpip
From the folder's file list and the shell code blocks in SKILL.md.
Network
Hosts in commands or code, which the agent is likely to contact:
eutils.ncbi.nlm.nih.govftp.ncbi.nlm.nih.gov
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Clinical Databases Clinvar Lookup loads about 1.4k tokens when it runs. Until then it costs about 63 tokens; SKILL.md has 307 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 307 words (~1,429 tokens).
“Reference examples tested with: Entrez Direct 21.0+, bcftools 1.19+”
- name
- bio-clinical-databases-clinvar-lookup
- tool_type
- python
- primary_tool
- requests
Files
SKILL.md and 2 other files in skills/bio-clinical-databases-clinvar-lookup of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/clinvar_query.py
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Compare with similar skills
Bio Clinical Databases Clinvar Lookup next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Clinical Databases Clinvar Lookup this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | — | ~1.4k | Automated safety check: Pass | None | |
| Bio Ensembl RESTGPTomics/bioSkills | 1.2k | 2 repos | ~3.6k | Automated safety check: Pass | MIT | |
| Bio Pathway Kegg PathwaysGPTomics/bioSkills | 1.2k | 1 repos | ~5.4k | Automated safety check: Pass | MIT | |
| Kegg Databasejaechang-hits/SciAgent-Skills | 374 | 1 repos | ~4.6k | Automated safety check: Pass | Custom licence | |
| Ncbi Blast APIwentorai/research-plugins | 298 | 1 repos | ~1.6k | Automated safety check: Pass | MIT | |
| Dbsnp Databasejaechang-hits/SciAgent-Skills | 374 | 1 repos | ~7.3k | Automated safety check: Pass | CC0-1.0 |
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Questions about Bio Clinical Databases Clinvar Lookup
What does Bio Clinical Databases Clinvar Lookup do?
Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. Bio Clinical Databases Clinvar Lookup is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF.
When should I use Bio Clinical Databases Clinvar Lookup?
Bio Clinical Databases Clinvar Lookup fits situations like: determining clinical significance of variants for diagnostic; research purposes.
How do I install Bio Clinical Databases Clinvar Lookup in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-clinvar-lookup -a claude-code`. Or copy the skill folder (skills/bio-clinical-databases-clinvar-lookup in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-clinical-databases-clinvar-lookup in your project. Claude Code loads it when a task matches its description.
How do I install Bio Clinical Databases Clinvar Lookup in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-clinvar-lookup -a codex`. Or copy the skill folder (skills/bio-clinical-databases-clinvar-lookup in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-clinical-databases-clinvar-lookup in your project. Codex loads it when a task matches its description.
Can I use Bio Clinical Databases Clinvar Lookup in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-clinvar-lookup -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-clinical-databases-clinvar-lookup, .gemini/skills/bio-clinical-databases-clinvar-lookup, .github/skills/bio-clinical-databases-clinvar-lookup and .opencode/skills/bio-clinical-databases-clinvar-lookup in your project.
What does Bio Clinical Databases Clinvar Lookup need to run?
Going by SKILL.md and its folder, Bio Clinical Databases Clinvar Lookup needs Python for the scripts in its folder and the command-line tools its instructions call (wget and pip). Our summary lists: Python 3.
Does Bio Clinical Databases Clinvar Lookup access the network?
SKILL.md names 2 domains. In commands or code: eutils.ncbi.nlm.nih.gov and ftp.ncbi.nlm.nih.gov; the agent is likely to contact these when it follows the instructions. This is read from the text; nothing was executed.
Is Bio Clinical Databases Clinvar Lookup safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Clinical Databases Clinvar Lookup use?
No licence was found for Bio Clinical Databases Clinvar Lookup or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Clinical Databases Clinvar Lookup use?
About 1.4k tokens (SKILL.md is roughly 5.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Clinical Databases Clinvar Lookup?
Skills that share tags, products or a category with Bio Clinical Databases Clinvar Lookup: Bio Ensembl REST (GPTomics/bioSkills, 1.2k stars), Bio Pathway Kegg Pathways (GPTomics/bioSkills, 1.2k stars), Kegg Database (jaechang-hits/SciAgent-Skills, 374 stars) and Ncbi Blast API (wentorai/research-plugins, 298 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Clinical Databases Clinvar Lookup?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.