Repository
htlin222/meta-pipe agent skills
- skills
- 15
- GitHub stars
- 134
GitHub description: “Claude Code-powered end-to-end meta-analysis automation: AI-assisted literature review, screening, extraction, analysis, and manuscript generation for systematic reviews and clinical evidence synthesis”
- Stars
- 134 (53 forks)
- Licence
- Unknown
- Last push
- Sep 2026
- Created
- Feb 2026
- clinical-research
- evidence-based-medicine
- meta-analysis
- python
- reproducible-research
- systematic-review
- biostatistics
- claude-code
- clinical-trials
- data-extraction
- manuscript-generation
- research-automation
Install all skills
npx skills add htlin222/meta-pipeAdd --skill <name> for a single skill and -a <agent> to choose the agent (see the agent guides).
Skills in htlin222/meta-pipe, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Define extraction schema, extract study data from full texts, and store it in a structured database for meta-analysis. | htlin222/ | 134 | — | ~1.6k | Automated safety check: Pass | Unknown | 14 days ago |
| 2 | End-to-end AI-assisted meta-analysis pipeline orchestration from TOPIC.txt to final manuscript and reviewer responses. | htlin222/ | 134 | — | ~2.3k | Automated safety check: Pass | Unknown | 14 days ago |
| 3 | Collect and manage full-text PDFs for included studies, track provenance, and prepare documents for extraction. | htlin222/ | 134 | — | ~1.7k | Automated safety check: Notes | Unknown | 14 days ago |
| 4 | Perform title and abstract screening, apply inclusion and exclusion criteria, and assess study quality or risk of bias. | htlin222/ | 134 | — | ~2.2k | Automated safety check: Pass | Unknown | 14 days ago |
| 5 | Conduct literature searches for meta-analysis using Python with uv, query PubMed and other databases, deduplicate results, and store round-based bibliographies with notes. | htlin222/ | 134 | — | ~2.1k | Automated safety check: Notes | Unknown | 14 days ago |
| 6 | Draft and render a meta-analysis manuscript with Quarto using an IMRaD structure and embedded figures/tables. | htlin222/ | 134 | — | ~7.9k | Automated safety check: Pass | Unknown | 14 days ago |
| 7 | Run statistical meta-analysis in R with renv, generate effect estimates, heterogeneity, and publication bias diagnostics, and export figures and tables. | htlin222/ | 134 | — | ~985 | Automated safety check: Pass | Unknown | 14 days ago |
| 8 | Run network meta-analysis in R with gemtc (Bayesian, primary) and netmeta (frequentist, sensitivity), generate network graphs, league tables, SUCRA rankings, inconsistency diagnostics, and CINeMA… | htlin222/ | 134 | — | ~2k | Automated safety check: Pass | Unknown | 14 days ago |
| 9 | Publication-quality checks and enhancements for high-impact journal submissions, including PRISMA/MOOSE reporting, robust meta-analysis diagnostics (Hartung-Knapp, prediction intervals, influence)… | htlin222/ | 134 | — | ~1k | Automated safety check: Pass | Unknown | 14 days ago |
| 10 | Act as Reviewer 1 and Reviewer 2 for a meta-analysis manuscript, checking rigor, reproducibility, and reporting compliance. | htlin222/ | 134 | — | ~1k | Automated safety check: Pass | Unknown | 14 days ago |
| 11 | Share your completed meta-analysis project to the htlin222/meta-pipe GitHub Discussions board. | htlin222/ | 134 | — | ~1.2k | Automated safety check: Pass | Unknown | 14 days ago |
| 12 | Intake a meta-analysis topic from TOPIC.txt, translate it into a PICO or PECO protocol, and define eligibility, outcomes, and search scope. | htlin222/ | 134 | — | ~743 | Automated safety check: Pass | Unknown | 14 days ago |
| 13 | Interactive brainstorming to develop a meta-analysis topic. An agent skill from htlin222/meta-pipe. | htlin222/ | 134 | — | ~6.3k | Automated safety check: Pass | Unknown | 14 days ago |
| 14 | Orchestrate agent team for meta-analysis pipeline. An agent skill from htlin222/meta-pipe. | htlin222/ | 134 | — | ~2.5k | Automated safety check: Pass | Unknown | 14 days ago |
| 15 | Validate and maintain module registry. An agent skill from htlin222/meta-pipe. | htlin222/ | 134 | — | ~1.1k | Automated safety check: Pass | Unknown | 14 days ago |
Questions, answered from the data.
What is the best skill in htlin222/meta-pipe?
Ma Data Extraction from htlin222/meta-pipe ranks first of the 15 skills in htlin222/meta-pipe listed here, with the highest score: its repository has 134 GitHub stars, its SKILL.md loads about 1.6k tokens and it passes the automated safety check with no findings. Next come Ma End To End and Ma Fulltext Management.
Are the skills in htlin222/meta-pipe official?
None yet. All 15 skills in htlin222/meta-pipe listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How do I install all skills from htlin222/meta-pipe?
Run npx skills add htlin222/meta-pipe in your project: the open-source skills CLI installs the repository's skills into your coding agent's skills folder. To install a single skill, open its page here for the exact command.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.