Repository
antigenomics/vdjdb-db agent skills
- skills
- 8
- GitHub stars
- 157
GitHub description: “Git-based antigen specificity database storage & management.”
- Stars
- 157 (27 forks)
- Licence
- Unknown
- Last push
- Oct 2026
- Created
- Jan 2016
- Homepage
- vdjdb.com
- bioinformatics
- immunology
- database
- antigen
- t-cell
- binding
- hla
- mhc
- receptor
- recognition
Install all skills
npx skills add antigenomics/vdjdb-dbAdd --skill <name> for a single skill and -a <agent> to choose the agent (see the agent guides).
Skills in antigenomics/vdjdb-db, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Publish proofread VDJdb chunks through dev, reconcile publication issues, preserve record identity, keep validation changes separate, and close completed imports while tracking unresolved… | antigenomics/ | 157 | — | ~1.6k | Automated safety check: Pass | Unknown | today |
| 2 | Validate VDJdb build code, CI, output contracts and release promotions against a released corpus. | antigenomics/ | 157 | — | ~1.3k | Automated safety check: Pass | Unknown | today |
| 3 | Review repeated paired receptor-pMHC observations and metadata synonyms within and across VDJdb publications, preserving distinct experiments and reports. | antigenomics/ | 157 | — | ~1.8k | Automated safety check: Pass | Unknown | today |
| 4 | Extract TCR:pMHC specificity records from raw submission sources - supplementary XLS/CSV tables, PDF manuscripts, 10x Genomics contig and clonotype files, AIRR Rearrangement TSVs, Adaptive ImmunoSEQ… | antigenomics/ | 157 | — | ~1.2k | Automated safety check: Pass | Unknown | today |
| 5 | Canonicalise antigen.gene and antigen.species in a VDJdb chunk against the epitope dictionary and the gene and species alias tables, detect spurious values (UniProt descriptions, "[species]"… | antigenomics/ | 157 | — | ~715 | Automated safety check: Pass | Unknown | today |
| 6 | Validate a VDJdb chunk with vdjdb qc and vdjdb submission, explain every finding with a specific suggested fix and the authority behind it, resolve method-field and MHC problems the rules cannot… | antigenomics/ | 157 | — | ~1.1k | Automated safety check: Pass | Unknown | today |
| 7 | Extract and proofread deposited TCR-pMHC observations with the local tcren pipeline, then update the PDB aggregate chunk. | antigenomics/ | 157 | — | ~1.1k | Automated safety check: Pass | Unknown | today |
| 8 | Normalise the controlled-vocabulary fields of a raw VDJdb chunk TSV to the form the database records - IMGT V/D/J gene and allele names including Adaptive ImmunoSEQ and Arden conversions… | antigenomics/ | 157 | — | ~976 | Automated safety check: Pass | Unknown | today |
Questions, answered from the data.
What is the best skill in antigenomics/vdjdb-db?
Vdjdb Publish from antigenomics/vdjdb-db ranks first of the 8 skills in antigenomics/vdjdb-db listed here, with the highest score: its repository has 157 GitHub stars, its SKILL.md loads about 1.6k tokens and it passes the automated safety check with no findings. Next come Vdjdb Build Integrity and Vdjdb Duplicates.
Are the skills in antigenomics/vdjdb-db official?
None yet. All 8 skills in antigenomics/vdjdb-db listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How do I install all skills from antigenomics/vdjdb-db?
Run npx skills add antigenomics/vdjdb-db in your project: the open-source skills CLI installs the repository's skills into your coding agent's skills folder. To install a single skill, open its page here for the exact command.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.