Skill collection
FreedomIntelligence/OpenClaw-Medical-Skills agent skills, page 4
Skills in FreedomIntelligence/OpenClaw-Medical-Skills, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 145 | Interactive cell type annotation for IMC data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 146 | Cell type assignment from marker expression in IMC data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 147 | Identify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 148 | Deep learning-based variant calling from long reads using Clair3 for SNPs and small indels. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 149 | Calls DNA methylation from Oxford Nanopore sequencing data using signal-level analysis. | FreedomIntelligence/ | 3.1k | 1 repo | ~754 | Automated safety check: Pass | No licence | 2 mo ago |
| 150 | 150.Bio Longread Qc Quality control for long-read sequencing data using NanoPlot, NanoStat, and chopper. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 151 | Metabolite identification from m/z and retention time. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 152 | MS-DIAL-based metabolomics preprocessing as alternative to XCMS. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 153 | Quality control and normalization for metabolomics data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 154 | Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 155 | Targeted metabolomics analysis using MRM/SRM with standard curves. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 156 | Taxonomic classification of metagenomic reads using Kraken2. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 157 | Extract methylation calls from Bismark BAM files using bismarkmethylationextractor. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 158 | Differentially methylated region (DMR) detection using methylKit tiles, bsseq BSmooth, and DMRcate. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 159 | DNA methylation analysis with methylKit in R. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 160 | Amplicon sequence variant (ASV) inference from 16S rRNA or ITS amplicon sequencing using DADA2. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 161 | Alpha and beta diversity analysis for microbiome data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 162 | Predict metagenome functional content from 16S rRNA marker gene data using PICRUSt2. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 163 | Taxonomic classification of ASVs using reference databases like SILVA, GTDB, or UNITE. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 164 | Similarity Network Fusion (SNF) for patient stratification using multi-omics data. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 165 | Gene Ontology over-representation analysis using clusterProfiler enrichGO. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 166 | 166.Bio Pathway Gsea Gene Set Enrichment Analysis using clusterProfiler gseGO and gseKEGG. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 167 | KEGG pathway and module enrichment analysis using clusterProfiler enrichKEGG and enrichMKEGG. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 168 | Reactome pathway enrichment using ReactomePA package. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 169 | WikiPathways enrichment using clusterProfiler and rWikiPathways. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 170 | Protein grouping and inference from peptide identifications. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 171 | Quality control and assessment for proteomics data. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 172 | Remove sequencing adapters from FASTQ files using Cutadapt and Trimmomatic. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 173 | All-in-one read preprocessing with fastp including adapter trimming, quality filtering, deduplication, base correction, and HTML report generation. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 174 | Filter reads by quality scores, length, and N content using Trimmomatic and fastp. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 175 | Generate and interpret quality reports from FASTQ files using FastQC and MultiQC. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 176 | Detect and quantify translated ORFs from Ribo-seq data including uORFs and novel ORFs using RiboCode and ORFquant. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 177 | Validate Ribo-seq data quality by checking 3-nucleotide periodicity and calculating P-site offsets. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 178 | 178.Bio Rnaseq Qc RNA-seq specific quality control including rRNA contamination detection, strandedness verification, gene body coverage, and transcript integrity metrics. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 179 | Calculate sequence statistics (N50, length distribution, GC content, summary reports) using Biopython. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 180 | Integrate multiple scRNA-seq samples/batches using Harmony, scVI, Seurat anchors, and fastMNN. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 181 | Automated cell type annotation using reference-based methods including CellTypist, scPred, SingleR, and Azimuth for consistent, reproducible cell labeling. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 182 | Dimensionality reduction and clustering for single-cell RNA-seq using Seurat (R) and Scanpy (Python). | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 183 | Find marker genes and annotate cell types in single-cell RNA-seq using Seurat (R) and Scanpy (Python). | FreedomIntelligence/ | 3.1k | 1 repo | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 184 | Analyze multi-modal single-cell data (CITE-seq, Multiome, spatial). | FreedomIntelligence/ | 3.1k | 1 repo | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 185 | Analyze cell-cell communication in spatial transcriptomics data using ligand-receptor analysis with Squidpy. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 186 | Estimate cell type composition in spatial transcriptomics spots using reference-based deconvolution. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 187 | Identify spatial domains and tissue regions in spatial transcriptomics data using Squidpy and Scanpy. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.1k | Automated safety check: Pass | No licence | 2 mo ago |
| 188 | Build spatial neighbor graphs for spatial transcriptomics data using Squidpy. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 189 | Quality control, filtering, normalization, and feature selection for spatial transcriptomics data. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 190 | Compute spatial statistics for spatial transcriptomics data using Squidpy. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 191 | Visualize spatial transcriptomics data using Squidpy and Scanpy. | FreedomIntelligence/ | 3.1k | 1 repo | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 192 | Analyze BCR repertoires for somatic hypermutation, clonal lineages, and B cell phylogenetics using the Immcantation framework. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
