Human Protein Atlas Database
google-deepmind/science-skills
A skill your agent uses when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).
Agent skill
Bio Immunoinformatics Neoantigen Prediction
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Identify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy.
Install Bio Immunoinformatics Neoantigen Prediction
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-immunoinformatics-neoantigen-prediction -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-immunoinformatics-neoantigen-prediction --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-immunoinformatics-neoantigen-prediction .claude/skills/bio-immunoinformatics-neoantigen-prediction && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-immunoinformatics-neoantigen-prediction" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-immunoinformatics-neoantigen-prediction into .claude/skills/bio-immunoinformatics-neoantigen-prediction/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-immunoinformatics-neoantigen-prediction", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-immunoinformatics-neoantigen-predictionType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-immunoinformatics-neoantigen-prediction -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-immunoinformatics-neoantigen-prediction --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-immunoinformatics-neoantigen-prediction .agents/skills/bio-immunoinformatics-neoantigen-prediction && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-immunoinformatics-neoantigen-prediction" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-immunoinformatics-neoantigen-prediction into .agents/skills/bio-immunoinformatics-neoantigen-prediction/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-immunoinformatics-neoantigen-prediction", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-immunoinformatics-neoantigen-prediction -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-immunoinformatics-neoantigen-prediction --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-immunoinformatics-neoantigen-prediction .cursor/skills/bio-immunoinformatics-neoantigen-prediction && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-immunoinformatics-neoantigen-prediction" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-immunoinformatics-neoantigen-prediction into .cursor/skills/bio-immunoinformatics-neoantigen-prediction/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-immunoinformatics-neoantigen-prediction", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-immunoinformatics-neoantigen-prediction--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-immunoinformatics-neoantigen-prediction -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-immunoinformatics-neoantigen-prediction --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-immunoinformatics-neoantigen-prediction .gemini/skills/bio-immunoinformatics-neoantigen-prediction && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-immunoinformatics-neoantigen-prediction" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-immunoinformatics-neoantigen-prediction into .gemini/skills/bio-immunoinformatics-neoantigen-prediction/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-immunoinformatics-neoantigen-prediction", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-immunoinformatics-neoantigen-predictionInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-immunoinformatics-neoantigen-prediction -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-immunoinformatics-neoantigen-prediction .github/skills/bio-immunoinformatics-neoantigen-prediction && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-immunoinformatics-neoantigen-prediction" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-immunoinformatics-neoantigen-prediction into .github/skills/bio-immunoinformatics-neoantigen-prediction/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-immunoinformatics-neoantigen-prediction", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-immunoinformatics-neoantigen-prediction -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-immunoinformatics-neoantigen-prediction --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-immunoinformatics-neoantigen-prediction .opencode/skills/bio-immunoinformatics-neoantigen-prediction && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-immunoinformatics-neoantigen-prediction" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-immunoinformatics-neoantigen-prediction into .opencode/skills/bio-immunoinformatics-neoantigen-prediction/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-immunoinformatics-neoantigen-prediction", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-immunoinformatics-neoantigen-prediction- GitHub stars
- 3.1k
- Used in
- 1 other repo
- Token cost
- ~2.4k tokens
- SKILL.md length
- 380 words
- Files
- 3
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Identify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy.
- Identifying vaccine targets
- SKILL.md covers Version Compatibility, pVACtools Pipeline (Ensembl…, pVACseq Workflow (Ensembl VEP… and VCF Annotation Requirements…, plus 5 more sections
- Runs Python scripts from its folder; calls pip and conda
- Checkpoint inhibitor response biomarkers from tumor sequencing data
What it does
Bio Immunoinformatics Neoantigen Prediction is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Identify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy. Predict mutant peptides that bind patient HLA and may elicit T-cell responses. Use when identifying vaccine targets or checkpoint inhibitor response biomarkers from tumor sequencing data.
Its SKILL.md is about 2.4k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/neoantigen_prediction.py` and `usage-guide.md`).
It sits in Research & Science. It works with Ensembl. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Identifying vaccine targets
- Checkpoint inhibitor response biomarkers from tumor sequencing data
Example prompts
- “/bio-immunoinformatics-neoantigen-prediction”
Requirements
- Python 3
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (Python), which the agent can run.
Shell commands in SKILL.md call:
pipconda
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Immunoinformatics Neoantigen Prediction loads about 2.4k tokens when it runs. Until then it costs about 84 tokens; SKILL.md has 380 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 380 words (~2,361 tokens).
“Reference examples tested with: Ensembl VEP 111+, MHCflurry 2.1+, pVACtools 4.1+, pandas 2.2+”
- name
- bio-immunoinformatics-neoantigen-prediction
- tool_type
- python
- primary_tool
- pVACtools
Files
SKILL.md and 2 other files in skills/bio-immunoinformatics-neoantigen-prediction of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/neoantigen_prediction.py
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 9, 2026.
Compare with similar skills
Bio Immunoinformatics Neoantigen Prediction next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Immunoinformatics Neoantigen Prediction this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~2.4k | Automated safety check: Pass | None | |
| Human Protein Atlas Databasegoogle-deepmind/science-skills | 3.2k | 2 repos | ~1.6k | Automated safety check: Pass | Apache-2.0 | |
| External API ChangeGuyTeichman/RNAlysis | 139 | — | ~1.8k | Automated safety check: Pass | MIT | |
| Ensembl Databasedavila7/claude-code-templates | 33k | 10 repos | ~2.1k | Automated safety check: Pass | MIT | |
| Bio DB ToolsDrugClaw/DrugClaw | 126 | — | ~1.4k | Automated safety check: Pass | Apache-2.0 | |
| Annotating Variantsmaziyarpanahi/openmed | 5.5k | — | ~2.1k | Automated safety check: Pass | Apache-2.0 |
Similar skills
External API Change
GuyTeichman/RNAlysis
Workflow for fixing or changing RNAlysis code that talks to an EXTERNAL WEB SERVICE — UniProt, Ensembl, PANTHER, PhylomeDB, OrthoInspector, KEGG, or GO.
Ensembl Database
davila7/claude-code-templates
Query Ensembl genome database REST API for 250+ species. An agent skill from davila7/claude-code-templates.
Bio DB Tools
DrugClaw/DrugClaw
Query public biology databases and APIs including UniProt, RCSB PDB, AlphaFold DB, ClinVar, dbSNP, gnomAD, Ensembl, GEO, InterPro, KEGG, OpenTargets, Reactome, and STRING.
Annotating Variants
maziyarpanahi/openmed
Annotates VCF variants and normalizes HGVS nomenclature with public, license-free annotators (Ensembl VEP REST, VEP/SnpEff/ANNOVAR offline) and links variants to gnomAD population frequencies and…
Gget
davila7/claude-code-templates
CLI/Python toolkit for rapid bioinformatics queries. An agent skill from davila7/claude-code-templates.
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Related
Works with
Categories
Questions about Bio Immunoinformatics Neoantigen Prediction
What does Bio Immunoinformatics Neoantigen Prediction do?
Identify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy. Bio Immunoinformatics Neoantigen Prediction is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Identify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy.
When should I use Bio Immunoinformatics Neoantigen Prediction?
Bio Immunoinformatics Neoantigen Prediction fits situations like: identifying vaccine targets; checkpoint inhibitor response biomarkers from tumor sequencing data.
How do I install Bio Immunoinformatics Neoantigen Prediction in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-immunoinformatics-neoantigen-prediction -a claude-code`. Or copy the skill folder (skills/bio-immunoinformatics-neoantigen-prediction in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-immunoinformatics-neoantigen-prediction in your project. Claude Code loads it when a task matches its description.
How do I install Bio Immunoinformatics Neoantigen Prediction in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-immunoinformatics-neoantigen-prediction -a codex`. Or copy the skill folder (skills/bio-immunoinformatics-neoantigen-prediction in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-immunoinformatics-neoantigen-prediction in your project. Codex loads it when a task matches its description.
Can I use Bio Immunoinformatics Neoantigen Prediction in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-immunoinformatics-neoantigen-prediction -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-immunoinformatics-neoantigen-prediction, .gemini/skills/bio-immunoinformatics-neoantigen-prediction, .github/skills/bio-immunoinformatics-neoantigen-prediction and .opencode/skills/bio-immunoinformatics-neoantigen-prediction in your project.
What does Bio Immunoinformatics Neoantigen Prediction need to run?
Going by SKILL.md and its folder, Bio Immunoinformatics Neoantigen Prediction needs Python for the scripts in its folder and the command-line tools its instructions call (pip and conda). Our summary lists: Python 3.
Does Bio Immunoinformatics Neoantigen Prediction access the network?
SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Is Bio Immunoinformatics Neoantigen Prediction safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Immunoinformatics Neoantigen Prediction use?
No licence was found for Bio Immunoinformatics Neoantigen Prediction or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Immunoinformatics Neoantigen Prediction use?
About 2.4k tokens (SKILL.md is roughly 9.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Immunoinformatics Neoantigen Prediction?
Skills that share tags, products or a category with Bio Immunoinformatics Neoantigen Prediction: Human Protein Atlas Database (google-deepmind/science-skills, 3.2k stars), External API Change (GuyTeichman/RNAlysis, 139 stars), Ensembl Database (davila7/claude-code-templates, 33k stars) and Bio DB Tools (DrugClaw/DrugClaw, 126 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Immunoinformatics Neoantigen Prediction?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.