Agent skill
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Calls DNA methylation from Oxford Nanopore sequencing data using signal-level analysis.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-long-read-sequencing-nanopore-methylation -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-long-read-sequencing-nanopore-methylation --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-long-read-sequencing-nanopore-methylation .claude/skills/bio-long-read-sequencing-nanopore-methylation && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-long-read-sequencing-nanopore-methylation" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-long-read-sequencing-nanopore-methylation into .claude/skills/bio-long-read-sequencing-nanopore-methylation/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-long-read-sequencing-nanopore-methylation", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-long-read-sequencing-nanopore-methylationType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-long-read-sequencing-nanopore-methylation -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-long-read-sequencing-nanopore-methylation --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-long-read-sequencing-nanopore-methylation .agents/skills/bio-long-read-sequencing-nanopore-methylation && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-long-read-sequencing-nanopore-methylation" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-long-read-sequencing-nanopore-methylation into .agents/skills/bio-long-read-sequencing-nanopore-methylation/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-long-read-sequencing-nanopore-methylation", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-long-read-sequencing-nanopore-methylation -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-long-read-sequencing-nanopore-methylation --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-long-read-sequencing-nanopore-methylation .cursor/skills/bio-long-read-sequencing-nanopore-methylation && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-long-read-sequencing-nanopore-methylation" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-long-read-sequencing-nanopore-methylation into .cursor/skills/bio-long-read-sequencing-nanopore-methylation/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-long-read-sequencing-nanopore-methylation", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-long-read-sequencing-nanopore-methylation--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-long-read-sequencing-nanopore-methylation -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-long-read-sequencing-nanopore-methylation --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-long-read-sequencing-nanopore-methylation .gemini/skills/bio-long-read-sequencing-nanopore-methylation && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-long-read-sequencing-nanopore-methylation" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-long-read-sequencing-nanopore-methylation into .gemini/skills/bio-long-read-sequencing-nanopore-methylation/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-long-read-sequencing-nanopore-methylation", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-long-read-sequencing-nanopore-methylationInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-long-read-sequencing-nanopore-methylation -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-long-read-sequencing-nanopore-methylation .github/skills/bio-long-read-sequencing-nanopore-methylation && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-long-read-sequencing-nanopore-methylation" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-long-read-sequencing-nanopore-methylation into .github/skills/bio-long-read-sequencing-nanopore-methylation/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-long-read-sequencing-nanopore-methylation", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-long-read-sequencing-nanopore-methylation -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-long-read-sequencing-nanopore-methylation --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-long-read-sequencing-nanopore-methylation .opencode/skills/bio-long-read-sequencing-nanopore-methylation && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-long-read-sequencing-nanopore-methylation" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-long-read-sequencing-nanopore-methylation into .opencode/skills/bio-long-read-sequencing-nanopore-methylation/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-long-read-sequencing-nanopore-methylation", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
bio-long-read-sequencing-nanopore-methylationCalls DNA methylation from Oxford Nanopore sequencing data using signal-level analysis.
Bio Long Read Sequencing Nanopore Methylation is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Calls DNA methylation from Oxford Nanopore sequencing data using signal-level analysis. Use when detecting 5mC or 6mA modifications directly from nanopore reads without bisulfite conversion.
Its SKILL.md is about 750 tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/modkit_methylation.sh` and `usage-guide.md`).
The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Ships script files (Shell), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Bio Long Read Sequencing Nanopore Methylation loads about 754 tokens when it runs. Until then it costs about 59 tokens; SKILL.md has 148 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
Without a licence we can't republish the file, so here is its outline and opening line. It has 148 words (~754 tokens).
“Reference examples tested with: methylKit 1.28+, minimap2 2.26+, samtools 1.19+”
SKILL.md and 2 other files in skills/bio-long-read-sequencing-nanopore-methylation of FreedomIntelligence/OpenClaw-Medical-Skills.
Open the folder on GitHubat commit b1f9b6e
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 9, 2026.
Bio Long Read Sequencing Nanopore Methylation next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Long Read Sequencing Nanopore Methylation this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~754 | Automated safety check: Pass | None | |
| Bio Long Read Sequencing Nanopore MethylationGPTomics/bioSkills | 1.2k | 1 repos | ~3k | Automated safety check: Pass | MIT | |
| Bio Write SequencesGPTomics/bioSkills | 1.2k | 3 repos | ~2.1k | Automated safety check: Pass | MIT | |
| Bio Read SequencesGPTomics/bioSkills | 1.2k | 1 repos | ~3.5k | Automated safety check: Pass | MIT | |
| Bio Long Read Sequencing Haplotype PhasingGPTomics/bioSkills | 1.2k | 1 repos | ~3.1k | Automated safety check: Pass | MIT | |
| Bio Methylation Differential CpgGPTomics/bioSkills | 1.2k | 1 repos | ~6.1k | Automated safety check: Pass | MIT |
GPTomics/bioSkills
Calls DNA base modifications (5mC, 5hmC, 6mA, 4mC) directly from Oxford Nanopore and PacBio HiFi long reads encoded as MM/ML SAM tags, piles them into per-site bedMethyl with modkit (or pb-CpG-tools…
GPTomics/bioSkills
Write biological sequences to files (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO.
GPTomics/bioSkills
Read biological sequence files (FASTA, FASTQ, GenBank, EMBL, ABI, SFF) with Biopython Bio.SeqIO, choosing between streaming, in-memory, and on-disk-indexed access.
GPTomics/bioSkills
Phases small variants, SVs, and methylation from Oxford Nanopore and PacBio long reads (read-backed/physical phasing) with WhatsHap, LongPhase, or HiPhase, and haplotags the BAM (HP/PS tags) for…
GPTomics/bioSkills
Tests individual CpG sites for differential methylation (DMC/DMP) from bisulfite sequencing counts or array/continuous beta-value matrices.
GPTomics/bioSkills
Computes DNA methylation age (DNAm age) and pace of aging by applying frozen elastic-net epigenetic clocks to a clean beta matrix with methylclock, dnaMethyAge, or methylCIPHER.
FreedomIntelligence/OpenClaw-Medical-Skills
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.
FreedomIntelligence/OpenClaw-Medical-Skills
Select and apply numerical differentiation schemes for PDE/ODE discretization.
FreedomIntelligence/OpenClaw-Medical-Skills
FHIR API development guide for building healthcare endpoints.
FreedomIntelligence/OpenClaw-Medical-Skills
Select and configure linear solvers for systems Ax=b in dense and sparse problems.
FreedomIntelligence/OpenClaw-Medical-Skills
Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research.
FreedomIntelligence/OpenClaw-Medical-Skills
Plan and evaluate mesh generation for numerical simulations.
Calls DNA methylation from Oxford Nanopore sequencing data using signal-level analysis. Bio Long Read Sequencing Nanopore Methylation is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Calls DNA methylation from Oxford Nanopore sequencing data using signal-level analysis.
Bio Long Read Sequencing Nanopore Methylation fits situations like: 6mA modifications directly from nanopore reads without bisulfite conversion.
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-long-read-sequencing-nanopore-methylation -a claude-code`. Or copy the skill folder (skills/bio-long-read-sequencing-nanopore-methylation in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-long-read-sequencing-nanopore-methylation in your project. Claude Code loads it when a task matches its description.
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-long-read-sequencing-nanopore-methylation -a codex`. Or copy the skill folder (skills/bio-long-read-sequencing-nanopore-methylation in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-long-read-sequencing-nanopore-methylation in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-long-read-sequencing-nanopore-methylation -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-long-read-sequencing-nanopore-methylation, .gemini/skills/bio-long-read-sequencing-nanopore-methylation, .github/skills/bio-long-read-sequencing-nanopore-methylation and .opencode/skills/bio-long-read-sequencing-nanopore-methylation in your project.
Going by SKILL.md and its folder, Bio Long Read Sequencing Nanopore Methylation needs a shell for the scripts in its folder. Our summary lists: A Bash shell.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
No licence was found for Bio Long Read Sequencing Nanopore Methylation or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
About 754 tokens (SKILL.md is roughly 3k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Bio Long Read Sequencing Nanopore Methylation: Bio Long Read Sequencing Nanopore Methylation (GPTomics/bioSkills, 1.2k stars), Bio Write Sequences (GPTomics/bioSkills, 1.2k stars), Bio Read Sequences (GPTomics/bioSkills, 1.2k stars) and Bio Long Read Sequencing Haplotype Phasing (GPTomics/bioSkills, 1.2k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.
