React Performance
affaan-m/ECC
React and Next.js performance optimization patterns adapted from Vercel Engineering's React Best Practices (https://github.com/vercel-labs/agent-skills).
Agent skill
Bio Metabolomics Pathway Mapping
by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills
Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst.
No licenceAuto-check passed
Install Bio Metabolomics Pathway Mapping
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-pathway-mapping -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-metabolomics-pathway-mapping --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-metabolomics-pathway-mapping .claude/skills/bio-metabolomics-pathway-mapping && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "bio-metabolomics-pathway-mapping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-metabolomics-pathway-mapping into .claude/skills/bio-metabolomics-pathway-mapping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-metabolomics-pathway-mapping", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-metabolomics-pathway-mappingType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-pathway-mapping -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-metabolomics-pathway-mapping --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/bio-metabolomics-pathway-mapping .agents/skills/bio-metabolomics-pathway-mapping && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "bio-metabolomics-pathway-mapping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-metabolomics-pathway-mapping into .agents/skills/bio-metabolomics-pathway-mapping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-metabolomics-pathway-mapping", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-pathway-mapping -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-metabolomics-pathway-mapping --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/bio-metabolomics-pathway-mapping .cursor/skills/bio-metabolomics-pathway-mapping && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "bio-metabolomics-pathway-mapping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-metabolomics-pathway-mapping into .cursor/skills/bio-metabolomics-pathway-mapping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-metabolomics-pathway-mapping", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git --path skills/bio-metabolomics-pathway-mapping--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-pathway-mapping -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-metabolomics-pathway-mapping --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/bio-metabolomics-pathway-mapping .gemini/skills/bio-metabolomics-pathway-mapping && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "bio-metabolomics-pathway-mapping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-metabolomics-pathway-mapping into .gemini/skills/bio-metabolomics-pathway-mapping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-metabolomics-pathway-mapping", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-metabolomics-pathway-mappingInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-pathway-mapping -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/bio-metabolomics-pathway-mapping .github/skills/bio-metabolomics-pathway-mapping && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "bio-metabolomics-pathway-mapping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-metabolomics-pathway-mapping into .github/skills/bio-metabolomics-pathway-mapping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-metabolomics-pathway-mapping", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-pathway-mapping -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-metabolomics-pathway-mapping --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/bio-metabolomics-pathway-mapping .opencode/skills/bio-metabolomics-pathway-mapping && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "bio-metabolomics-pathway-mapping" agent skill from https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/bio-metabolomics-pathway-mapping into .opencode/skills/bio-metabolomics-pathway-mapping/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "bio-metabolomics-pathway-mapping", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
bio-metabolomics-pathway-mapping- GitHub stars
- 3.1k
- Used in
- 1 other repo
- Token cost
- ~1.6k tokens
- SKILL.md length
- 160 words
- Files
- 3
- Skills in repo
- 279
- Repo updated
- First seen
- Licence
- None found
At a glance
Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst.
- Interpreting metabolomics results in the context of biochemical pathways
- SKILL.md covers Version Compatibility, KEGG Pathway Enrichment, Quantitative Enrichment… and Topology-Based Analysis, plus 8 more sections
- Runs R scripts from its folder
What it does
Bio Metabolomics Pathway Mapping is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Perform pathway enrichment and topology analysis. Use when interpreting metabolomics results in the context of biochemical pathways.
Its SKILL.md is about 1.6k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `usage-guide.md`).
The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.
When your agent uses it
- Interpreting metabolomics results in the context of biochemical pathways
Example prompts
- “/bio-metabolomics-pathway-mapping”
What it can do on your machine
Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (R), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Bio Metabolomics Pathway Mapping loads about 1.6k tokens when it runs. Until then it costs about 61 tokens; SKILL.md has 160 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 160 words (~1,646 tokens).
“Reference examples tested with: ReactomePA 1.46+, clusterProfiler 4.10+”
- name
- bio-metabolomics-pathway-mapping
- tool_type
- r
- primary_tool
- MetaboAnalystR
Files
SKILL.md and 2 other files in skills/bio-metabolomics-pathway-mapping of FreedomIntelligence/OpenClaw-Medical-Skills.
- SKILL.md
- examples/pathway_analysis.R
- usage-guide.md
Open the folder on GitHubat commit b1f9b6e
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 9, 2026.
Compare with similar skills
Bio Metabolomics Pathway Mapping next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Bio Metabolomics Pathway Mapping this skillFreedomIntelligence/OpenClaw-Medical-Skills | 3.1k | 1 repos | ~1.6k | Automated safety check: Pass | None | |
| React Performanceaffaan-m/ECC | 276k | 1 repos | ~4.5k | Automated safety check: Pass | MIT | |
| Bio Pathway Kegg PathwaysGPTomics/bioSkills | 1.2k | 1 repos | ~5.4k | Automated safety check: Pass | MIT | |
| Reactome Databasedavila7/claude-code-templates | 33k | 9 repos | ~1.9k | Automated safety check: Pass | MIT | |
| Pathway EnrichmentK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~4.2k | Automated safety check: Pass | MIT | |
| Performance Profileralirezarezvani/claude-skills | 28k | — | ~684 | Automated safety check: Pass | MIT |
Similar skills
Bio Pathway Kegg Pathways
GPTomics/bioSkills
Tests gene lists, ranked vectors, and fold-change vectors against KEGG pathways and modules with clusterProfiler enrichKEGG/enrichMKEGG (ORA), gseKEGG (GSEA), and SPIA/graphite (signed-topology…
Reactome Database
davila7/claude-code-templates
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.
Pathway Enrichment
K-Dense-AI/scientific-agent-skills
Performs pathway and gene-set enrichment analysis on gene lists or ranked gene data and interprets the results.
Performance Profiler
alirezarezvani/claude-skills
Systematic performance profiling for Node.js, Python, and Go applications.
Bio Metabolomics Pathway Mapping
GPTomics/bioSkills
Maps metabolomics results to biological pathways via over-representation (ORA), metabolite-set enrichment (MSEA/QEA), mummichog/PSEA on raw m/z peaks, and network-diffusion enrichment (FELLA), with…
More from FreedomIntelligence/OpenClaw-Medical-Skills
All 279 skills in this repoSingle Cell Rna Qc
FreedomIntelligence/OpenClaw-Medical-Skills
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations.
Differentiation Schemes
FreedomIntelligence/OpenClaw-Medical-Skills
Select and apply numerical differentiation schemes for PDE/ODE discretization.
Fhir Developer Skill
FreedomIntelligence/OpenClaw-Medical-Skills
FHIR API development guide for building healthcare endpoints.
Linear Solvers
FreedomIntelligence/OpenClaw-Medical-Skills
Select and configure linear solvers for systems Ax=b in dense and sparse problems.
Medical Research Toolkit
FreedomIntelligence/OpenClaw-Medical-Skills
Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research.
Mesh Generation
FreedomIntelligence/OpenClaw-Medical-Skills
Plan and evaluate mesh generation for numerical simulations.
Questions about Bio Metabolomics Pathway Mapping
What does Bio Metabolomics Pathway Mapping do?
Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Bio Metabolomics Pathway Mapping is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst.
When should I use Bio Metabolomics Pathway Mapping?
Bio Metabolomics Pathway Mapping fits situations like: interpreting metabolomics results in the context of biochemical pathways.
How do I install Bio Metabolomics Pathway Mapping in Claude Code?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-pathway-mapping -a claude-code`. Or copy the skill folder (skills/bio-metabolomics-pathway-mapping in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-metabolomics-pathway-mapping in your project. Claude Code loads it when a task matches its description.
How do I install Bio Metabolomics Pathway Mapping in Codex?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-pathway-mapping -a codex`. Or copy the skill folder (skills/bio-metabolomics-pathway-mapping in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-metabolomics-pathway-mapping in your project. Codex loads it when a task matches its description.
Can I use Bio Metabolomics Pathway Mapping in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-pathway-mapping -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-metabolomics-pathway-mapping, .gemini/skills/bio-metabolomics-pathway-mapping, .github/skills/bio-metabolomics-pathway-mapping and .opencode/skills/bio-metabolomics-pathway-mapping in your project.
What does Bio Metabolomics Pathway Mapping need to run?
Going by SKILL.md and its folder, Bio Metabolomics Pathway Mapping needs R for the scripts in its folder.
Does Bio Metabolomics Pathway Mapping access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Bio Metabolomics Pathway Mapping safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Bio Metabolomics Pathway Mapping use?
No licence was found for Bio Metabolomics Pathway Mapping or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Bio Metabolomics Pathway Mapping use?
About 1.6k tokens (SKILL.md is roughly 6.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Bio Metabolomics Pathway Mapping?
Skills that share tags, products or a category with Bio Metabolomics Pathway Mapping: React Performance (affaan-m/ECC, 276k stars), Bio Pathway Kegg Pathways (GPTomics/bioSkills, 1.2k stars), Reactome Database (davila7/claude-code-templates, 33k stars) and Pathway Enrichment (K-Dense-AI/scientific-agent-skills, 48k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Bio Metabolomics Pathway Mapping?
FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.
Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.