Agent skill

Bio Ribo Seq Riboseq Preprocessing

by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills

Preprocess ribosome profiling data including adapter trimming, size selection, rRNA removal, and alignment.

No licenceAuto-check passedWriting & Content

Install Bio Ribo Seq Riboseq Preprocessing

skills CLI
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-ribo-seq-riboseq-preprocessing -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-ribo-seq-riboseq-preprocessing --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-ribo-seq-riboseq-preprocessing .claude/skills/bio-ribo-seq-riboseq-preprocessing && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
bio-ribo-seq-riboseq-preprocessing
GitHub stars
3.1k
Used in
1 other repo
Token cost
~1.3k tokens
SKILL.md length
285 words
Files
3
Skills in repo
170
Repo updated
First seen
Licence
None found

At a glance

Preprocess ribosome profiling data including adapter trimming, size selection, rRNA removal, and alignment.

  • Preparing Ribo-seq reads for downstream analysis of translation
  • SKILL.md covers Version Compatibility, Workflow Overview, Adapter Trimming and Size Selection, plus 5 more sections
  • Runs Shell scripts from its folder; calls pip
  • Tasks that involve Translation

What it does

Bio Ribo Seq Riboseq Preprocessing is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Preprocess ribosome profiling data including adapter trimming, size selection, rRNA removal, and alignment. Use when preparing Ribo-seq reads for downstream analysis of translation.

Its SKILL.md is about 1.3k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/preprocess_riboseq.sh` and `usage-guide.md`).

It sits in Writing & Content, covering Translation. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.

When your agent uses it

  • Preparing Ribo-seq reads for downstream analysis of translation
  • Tasks that involve Translation

Example prompts

  • “/bio-ribo-seq-riboseq-preprocessing”

Requirements

  • Python 3
  • A Bash shell

What it can do on your machine

Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships script files (Shell), which the agent can run.

    Shell commands in SKILL.md call:

    • pip

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Bio Ribo Seq Riboseq Preprocessing loads about 1.3k tokens when it runs. Until then it costs about 54 tokens; SKILL.md has 285 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~54
When it runs · the whole SKILL.md, loaded when a task matches
~1.3k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 285 words (~1,259 tokens).

“Reference examples tested with: Bowtie2 2.5.3+, STAR 2.7.11+, cutadapt 4.4+, numpy 1.26+, pysam 0.22+, samtools 1.19+”

— opening of SKILL.md by FreedomIntelligence
name
bio-ribo-seq-riboseq-preprocessing
tool_type
cli
primary_tool
bowtie2

Read the full SKILL.md on GitHub

Files

SKILL.md and 2 other files in skills/bio-ribo-seq-riboseq-preprocessing of FreedomIntelligence/OpenClaw-Medical-Skills.

  • SKILL.md
  • examples/preprocess_riboseq.sh
  • usage-guide.md

Open the folder on GitHubat commit b1f9b6e

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Bio Ribo Seq Riboseq Preprocessing next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Bio Ribo Seq Riboseq Preprocessing compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Bio Ribo Seq Riboseq Preprocessing this skillFreedomIntelligence/OpenClaw-Medical-Skills3.1k1 repos~1.3kAutomated safety check: PassNone
Translation Diff ExportDevolutions/UniGetUI26k—~1.1kAutomated safety check: PassMIT
Sync Translationssymfony/symfony31k—~1.9kAutomated safety check: PassMIT
Translation Diff ImportDevolutions/UniGetUI26k—~750Automated safety check: PassMIT
Translation Diff TranslateDevolutions/UniGetUI26k—~934Automated safety check: PassMIT
Generate Translationspayloadcms/payload45k—~1.1kAutomated safety check: PassMIT

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Questions about Bio Ribo Seq Riboseq Preprocessing

What does Bio Ribo Seq Riboseq Preprocessing do?

Preprocess ribosome profiling data including adapter trimming, size selection, rRNA removal, and alignment. Bio Ribo Seq Riboseq Preprocessing is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Preprocess ribosome profiling data including adapter trimming, size selection, rRNA removal, and alignment.

When should I use Bio Ribo Seq Riboseq Preprocessing?

Bio Ribo Seq Riboseq Preprocessing fits situations like: preparing Ribo-seq reads for downstream analysis of translation; tasks that involve Translation.

How do I install Bio Ribo Seq Riboseq Preprocessing in Claude Code?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-ribo-seq-riboseq-preprocessing -a claude-code`. Or copy the skill folder (skills/bio-ribo-seq-riboseq-preprocessing in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-ribo-seq-riboseq-preprocessing in your project. Claude Code loads it when a task matches its description.

How do I install Bio Ribo Seq Riboseq Preprocessing in Codex?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-ribo-seq-riboseq-preprocessing -a codex`. Or copy the skill folder (skills/bio-ribo-seq-riboseq-preprocessing in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-ribo-seq-riboseq-preprocessing in your project. Codex loads it when a task matches its description.

Can I use Bio Ribo Seq Riboseq Preprocessing in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-ribo-seq-riboseq-preprocessing -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-ribo-seq-riboseq-preprocessing, .gemini/skills/bio-ribo-seq-riboseq-preprocessing, .github/skills/bio-ribo-seq-riboseq-preprocessing and .opencode/skills/bio-ribo-seq-riboseq-preprocessing in your project.

What does Bio Ribo Seq Riboseq Preprocessing need to run?

Going by SKILL.md and its folder, Bio Ribo Seq Riboseq Preprocessing needs a shell for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3; A Bash shell.

Does Bio Ribo Seq Riboseq Preprocessing access the network?

SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.

Is Bio Ribo Seq Riboseq Preprocessing safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Bio Ribo Seq Riboseq Preprocessing use?

No licence was found for Bio Ribo Seq Riboseq Preprocessing or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Bio Ribo Seq Riboseq Preprocessing use?

About 1.3k tokens (SKILL.md is roughly 5k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Bio Ribo Seq Riboseq Preprocessing?

Skills that share tags, products or a category with Bio Ribo Seq Riboseq Preprocessing: Translation Diff Export (Devolutions/UniGetUI, 26k stars), Sync Translations (symfony/symfony, 31k stars), Translation Diff Import (Devolutions/UniGetUI, 26k stars) and Translation Diff Translate (Devolutions/UniGetUI, 26k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Bio Ribo Seq Riboseq Preprocessing?

FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,052 GitHub stars. The repository holds 170 skills in this directory. The repository was last updated on July 21, 2026.

Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.