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Research & Science · By FreedomIntelligence
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 145 | Calculates molecular descriptors and fingerprints using RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 146 | 146.Bio Molecular Io Reads, writes, and converts molecular file formats (SMILES, SDF, MOL2, PDB) using RDKit and Open Babel. | FreedomIntelligence/ | 3.1k | — | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 147 | Enumerates chemical libraries through reaction SMARTS transformations using RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 148 | Creates sashimi plots showing RNA-seq read coverage and splice junction counts using ggsashimi or rmats2sashimiplot. | FreedomIntelligence/ | 3.1k | — | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 149 | Performs molecular similarity searches using Tanimoto coefficient on fingerprints via RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 150 | Analyzes alternative splicing at single-cell resolution using BRIE2 for probabilistic PSI estimation or leafcutter2 for cluster-based analysis with NMD detection. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 151 | 151.Bio Splicing Qc Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 152 | Quantifies alternative splicing events (PSI/percent spliced in) from RNA-seq using SUPPA2 from transcript TPM or rMATS-turbo from BAM files. | FreedomIntelligence/ | 3.1k | — | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 153 | Searches molecular libraries for substructure matches using SMARTS patterns with RDKit. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 154 | Call structural variants (SVs) from short-read sequencing using Manta, Delly, and LUMPY. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 155 | Performs structure-based virtual screening using AutoDock Vina 1.2 for molecular docking. | FreedomIntelligence/ | 3.1k | — | ~2.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 156 | Find differentially accessible chromatin regions between conditions using DiffBind or DESeq2. | FreedomIntelligence/ | 3.1k | — | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 157 | Detect transcription factor binding sites through footprinting analysis in ATAC-seq data using TOBIAS. | FreedomIntelligence/ | 3.1k | — | ~1.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 158 | Analyze transcription factor motif accessibility variability using chromVAR. | FreedomIntelligence/ | 3.1k | — | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 159 | Differential binding analysis using DiffBind. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 160 | De novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP. | FreedomIntelligence/ | 3.1k | — | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 161 | Annotate ChIP-seq peaks to genomic features and genes using ChIPseeker. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 162 | ChIP-seq peak calling using MACS3 (or MACS2). An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2k | Automated safety check: Pass | No licence | 2 mo ago |
| 163 | Query gnomAD for population allele frequencies to assess variant rarity. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | No licence | 2 mo ago |
| 164 | Query myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request. | FreedomIntelligence/ | 3.1k | — | ~1.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 165 | Visualize copy number profiles, segments, and compare across samples. | FreedomIntelligence/ | 3.1k | — | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 166 | Analyzes base editing and prime editing outcomes including editing efficiency, bystander edits, and indel frequencies. | FreedomIntelligence/ | 3.1k | — | ~889 | Automated safety check: Pass | No licence | 2 mo ago |
| 167 | Batch effect correction for CRISPR screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~2.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 168 | CRISPResso2 for analyzing CRISPR gene editing outcomes. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~1.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 169 | JACKS (Joint Analysis of CRISPR/Cas9 Knockout Screens) for modeling sgRNA efficacy and gene essentiality. | FreedomIntelligence/ | 3.1k | — | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 170 | CRISPR library design for genetic screens. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | — | ~3.6k | Automated safety check: Pass | No licence | 2 mo ago |
| 171 | Statistical testing for differentially abundant proteins between conditions. | FreedomIntelligence/ | 3.1k | — | ~1.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 172 | Generate daily or on-demand medical research briefs for any medical specialty. | FreedomIntelligence/ | 3.1k | — | ~798 | Automated safety check: Pass | No licence | 2 mo ago |
| 173 | Quick-reference sheet for OmicVerse tutorials spanning MOFA, GLUE pairing, SIMBA integration, TOSICA transfer, and StaVIA cartography. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 174 | Local Scanpy pipeline for single-cell RNA-seq QC, clustering, marker discovery, and optional two-group differential expression from raw-count .h5ad. | FreedomIntelligence/ | 3.1k | — | ~1.7k | Automated safety check: Pass | MIT | 2 mo ago |
