GitHub organization
Agent skills by ClawBio, page 2
Skills by ClawBio, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 49 | Differential expression analysis for label-free quantitative (LFQ) intensity data with standard MaxQuant and DIA-NN output. | ClawBio/ | 1.2k | 1 repo | ~1.6k | Automated safety check: Pass | MIT | today |
| 50 | Blood RNA-seq expression-outlier detection for rare-disease diagnostics. | ClawBio/ | 1.2k | 1 repo | ~1.2k | Automated safety check: Pass | MIT | today |
| 51 | 51.Recombinator Produce offspring genomes from parent pairs via meiotic recombination, mutation, and clinical evaluation | ClawBio/ | 1.2k | 1 repo | ~651 | Automated safety check: Pass | MIT | today |
| 52 | Local scVI/scANVI-based single-cell latent embedding and batch-aware integration from raw-count .h5ad or 10x Matrix Market input, with stable integrated AnnData export for downstream latent analysis. | ClawBio/ | 1.2k | 1 repo | ~2k | Automated safety check: Pass | MIT | today |
| 53 | Local Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optional CellTypist annotation, optional latent downstream mode from… | ClawBio/ | 1.2k | 1 repo | ~2.9k | Automated safety check: Pass | MIT | today |
| 54 | 54.Seq Wrangler NGS read QC, alignment, and BAM processing pipeline. An agent skill from ClawBio/ClawBio. | ClawBio/ | 1.2k | 1 repo | ~2.5k | Automated safety check: Pass | MIT | today |
| 55 | Scaffold a new ClawBio skill from a spec file (JSON/YAML) or interactively — generates SKILL.md, Python skeleton, tests, and updates catalog.json | ClawBio/ | 1.2k | 1 repo | ~2.1k | Automated safety check: Pass | MIT | today |
| 56 | Protein structure prediction with Boltz-2. An agent skill from ClawBio/ClawBio. | ClawBio/ | 1.2k | 1 repo | ~1.2k | Automated safety check: Pass | MIT | today |
| 57 | Evidence-grounded target validation scoring with GO/NO-GO decisions for drug discovery campaigns | ClawBio/ | 1.2k | 1 repo | ~2.3k | Automated safety check: Pass | MIT | today |
| 58 | Build, query, and analyse biomedical knowledge graphs in TuringDB, a columnar graph database with git-like versioning. | ClawBio/ | 1.2k | 1 repo | ~4.2k | Automated safety check: Pass | MIT | today |
| 59 | Annotate VCF variants with Ensembl VEP REST, ClinVar significance, gnomAD/population frequency context, and prioritized variant ranking. | ClawBio/ | 1.2k | 1 repo | ~2.8k | Automated safety check: Pass | MIT | today |
| 60 | Annotate VCF variants with Ensembl VEP, ClinVar, and gnomAD. | ClawBio/ | 1.2k | 1 repo | ~2.4k | Automated safety check: Pass | MIT | today |
| 61 | Generates professional clinical PDF reports in English from WES (Whole Exome Sequencing) data with clinical interpretation summary, pharmacogenomic alerts, and follow-up recommendations. | ClawBio/ | 1.2k | 1 repo | ~1.8k | Automated safety check: Pass | Proprietary | today |
| 62 | Generates professional clinical PDF reports in Spanish from WES (Whole Exome Sequencing) data with clinical interpretation, pharmacogenomic alerts, and follow-up recommendations. | ClawBio/ | 1.2k | 1 repo | ~2.1k | Automated safety check: Pass | Proprietary | today |
| 63 | Wrapper skill for running nf-core/rnaseq bulk RNA-seq preprocessing from FASTQ or BAM inputs with strict preflight, reproducibility outputs, and downstream handoff to ClawBio bulk RNA-seq DE skills. | ClawBio/ | 1.2k | 1 repo | ~8.9k | Automated safety check: Pass | MIT | today |
| 64 | 64.Rnaseq De Differential expression analysis for bulk RNA-seq and pseudo-bulk count matrices with QC, PCA, and contrast testing. | ClawBio/ | 1.2k | 1 repo | ~561 | Automated safety check: Pass | MIT | today |
| 65 | Aggregate public target-level evidence across omics and translational sources for research triage. | ClawBio/ | 1.2k | 1 repo | ~648 | Automated safety check: Pass | MIT | today |
| 66 | Given an article DOI or PubMed ID, discover and download the genomics data files deposited by the authors (VCF, FASTA, H5AD, CSV, JSON, BAM, etc.) from public repositories such as GEO, ENA, Zenodo… | ClawBio/ | 1.2k | — | ~4k | Automated safety check: Pass | MIT | today |
| 67 | Run read-only SQL against BigQuery public datasets with local result capture, cost safeguards, and reproducibility outputs. | ClawBio/ | 1.2k | — | ~1.5k | Automated safety check: Pass | MIT | today |
| 68 | 68.Bioqc MCP Automated sequencing quality control and advanced visualization wrapping FastQC, MultiQC, and custom chart generation. | ClawBio/ | 1.2k | — | ~2.2k | Automated safety check: Pass | MIT | today |
| 69 | Genome, transcriptome, and protein completeness assessment via BUSCO v6. | ClawBio/ | 1.2k | — | ~4.9k | Automated safety check: Pass | MIT | today |
| 70 | Given a gene and a single-cell atlas, compute how cell-type-specific its expression is — the tau specificity index, Sarle's expression bimodality coefficient, and the cell types that drive the… | ClawBio/ | 1.2k | — | ~4.3k | Automated safety check: Pass | MIT | today |
| 71 | Methylation cycle analysis — enzymatic activity profiles, Net Methylation Capacity, BH4 axis estimates, compound heterozygosity detection from SNP genotype data. | ClawBio/ | 1.2k | — | ~4.3k | Automated safety check: Pass | MIT | today |
| 72 | Eval-driven skill tuning. An agent skill from ClawBio/ClawBio. | ClawBio/ | 1.2k | — | ~1.4k | Automated safety check: Pass | MIT | today |
| 73 | Screen a genotype set (array or WGS-derived) against OMIM-morbid, ACMG-SF and Hereditary-Cancer gene panels and prioritise carried variants by ClinVar significance, gnomAD frequency, inheritance… | ClawBio/ | 1.2k | — | ~962 | Automated safety check: Pass | MIT | today |
| 74 | Classify structural variants / copy-number variants (deletions and duplications) using the ClinGen / ACMG 2019 (Riggs et al. | ClawBio/ | 1.2k | — | ~3.8k | Automated safety check: Pass | MIT | today |
| 75 | Extract numerical data from scientific figure images using Claude vision + OpenCV calibration. | ClawBio/ | 1.2k | — | ~801 | Automated safety check: Pass | MIT | today |
| 76 | Objective-driven pooled viability screen analysis: QC, hit calling, context-selectivity, biomarker sweep, and ranked repurposing candidates. | ClawBio/ | 1.2k | — | ~4.7k | Automated safety check: Pass | MIT | today |
| 77 | Predict gene and transcript structure (intervals, exons, strand) from a DNA sequence using the Genomic Intelligence DNA Annotation model, via the hosted /v1/tasks/annotation/predict API. | ClawBio/ | 1.2k | — | ~2.1k | Automated safety check: Notes | MIT | today |
| 78 | 78.Gi Chromatin Predict chromatin state — histone marks, DNase, TF binding — across 919 tracks (DeepSEA-style) for DNA sequences, via the hosted Genomic Intelligence /v1/tasks/chromatin/predict API. | ClawBio/ | 1.2k | — | ~1.8k | Automated safety check: Notes | MIT | today |
| 79 | 79.Gi Enhancer Predict enhancer activity in DNA sequences using the Genomic Intelligence G0 DeepSTARR model, via the hosted /v1/tasks/enhancer/predict API. | ClawBio/ | 1.2k | — | ~1.8k | Automated safety check: Notes | MIT | today |
| 80 | Predict tissue / cell-type expression (log TPM + TPM) from 9,198–500,000 bp of DNA around a TSS, at least 4,599 bp each side (anything but exactly 9,198 bp needs --tss-index) using the Genomic… | ClawBio/ | 1.2k | — | ~2.9k | Automated safety check: Notes | MIT | today |
| 81 | 81.Gi Promoter Detect promoter regions in DNA sequences using the Genomic Intelligence G0 transformer (GENA-LM BERT Large), via the hosted /v1/tasks/promoter/predict API. | ClawBio/ | 1.2k | — | ~2.6k | Automated safety check: Notes | MIT | today |
| 82 | 82.Gi Splice Detect splice donor and acceptor sites in DNA sequences using the Genomic Intelligence G0 BigBird transformer, via the hosted /v1/tasks/splice/predict API. | ClawBio/ | 1.2k | — | ~2.2k | Automated safety check: Notes | MIT | today |
| 83 | 83.Just PRs MCP Compute evidence-aware polygenic risk scores from a local VCF or WGS file through the validated just-prs engine and a pinned local just-prs MCP server. | ClawBio/ | 1.2k | — | ~3.5k | Automated safety check: Pass | MIT | today |
| 84 | 84.Labstep Query and display Labstep electronic lab notebook data — experiments, protocols, resources, and inventory — via labstepPy. | ClawBio/ | 1.2k | — | ~2.3k | Automated safety check: Pass | MIT | today |
| 85 | Deterministic marker-dominance region mapping from local spot-count CSVs | ClawBio/ | 1.2k | — | ~1.6k | Automated safety check: Pass | MIT | today |
| 86 | Wrapper skill for running nf-core/rnastructurome — chemical-probing RNA structure analysis (SHAPE/DMS, RT-stop/MaP readout) from FASTQ to per-base reactivity, secondary-structure predictions, and 2D… | ClawBio/ | 1.2k | — | ~6.6k | Automated safety check: Pass | MIT | today |
| 87 | Interactive Goeminne proteomic aging clock with organ filters and per-protein contribution breakdown (protein NPX × coefficient). | ClawBio/ | 1.2k | — | ~2.1k | Automated safety check: Pass | MIT | today |
| 88 | Gene-set pathway enrichment analysis using Enrichr — queries KEGG, GO (BP/MF/CC), Reactome, WikiPathways, MSigDB, and Disease Ontology. | ClawBio/ | 1.2k | — | ~1.8k | Automated safety check: Pass | MIT | today |
| 89 | End-to-end ML phylogenetic tree inference — MSA, trimming, ModelFinder, IQ-TREE2/RAxML-NG. | ClawBio/ | 1.2k | — | ~4.4k | Automated safety check: Pass | MIT | today |
| 90 | Search PubMed, preserve complete abstracts and sections, and produce research briefings with abstract openings or optional OpenAI/Ollama summaries. | ClawBio/ | 1.2k | — | ~3.3k | Automated safety check: Pass | MIT | today |
| 91 | Count rare, high-impact loss-of-function variants carried in a VCF, annotated with molecular consequence and population allele frequency | ClawBio/ | 1.2k | — | ~2.5k | Automated safety check: Pass | MIT | today |
| 92 | Deterministic multi-sample QC triage for identity, sex, contamination, and batch-shift outliers | ClawBio/ | 1.2k | — | ~1.7k | Automated safety check: Pass | MIT | today |
| 93 | Analyse 10x Visium spatial transcriptomics: SpaceRanger outs or spatial h5ad in, then QC, Leiden clustering, Wilcoxon markers, Moran's I, neighbourhood enrichment and co-occurrence in one local… | ClawBio/ | 1.2k | — | ~4.3k | Automated safety check: Pass | MIT | today |
| 94 | Query metadata and download data from EMBL-EBI BioStudies, the database that describes biological studies and links their data across collections (ArrayExpress, BioImages, BioModels, EGA-linked… | ClawBio/ | 1.2k | — | ~4.2k | Automated safety check: Pass | MIT | today |
| 95 | 95.Ena Fetch Query metadata and download sequencing data from the European Nucleotide Archive (ENA) via the Portal and Browser APIs. | ClawBio/ | 1.2k | — | ~4.9k | Automated safety check: Pass | MIT | today |
| 96 | 96.Geo Fetch Query metadata and download data from the NCBI Gene Expression Omnibus (GEO). | ClawBio/ | 1.2k | — | ~4.7k | Automated safety check: Pass | MIT | today |
