GitHub organization
Agent skills by ClawBio
- skills
- 99
- repository
- 1
Repositories by ClawBio
Skills by ClawBio, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Fetch a region of cis-eQTL summary statistics from EBI eQTL Catalogue v7+ via tabix-on-FTP. | ClawBio/ | 1.2k | 1 repo | ~4.3k | Automated safety check: Pass | MIT | yesterday |
| 2 | Query TCGA tumor biology through the ucscxenatoolspy API. An agent skill from ClawBio/ClawBio. | ClawBio/ | 1.2k | — | ~4.7k | Automated safety check: Pass | MIT | yesterday |
| 3 | Fetch a region of GWAS summary statistics from the NHGRI-EBI GWAS Catalog harmonised collection via tabix-on-FTP. | ClawBio/ | 1.2k | 1 repo | ~3.5k | Automated safety check: Pass | MIT | yesterday |
| 4 | 4.Dnasp Population genetics of pre-aligned DNA sequences or multi-sample VCFs using selected DnaSP 6 methods. | ClawBio/ | 1.2k | — | ~5.1k | Automated safety check: Pass | MIT | yesterday |
| 5 | Compute pairwise r² between a lead variant and every variant in a window using the 1000 Genomes Phase 3 GRCh38 reference panel, ancestry-stratified. | ClawBio/ | 1.2k | — | ~3.9k | Automated safety check: Pass | MIT | yesterday |
| 6 | Download genomes, genes, virus sequences, and taxonomy data from NCBI using the datasets and dataformat CLI tools. | ClawBio/ | 1.2k | 1 repo | ~2.8k | Automated safety check: Pass | MIT | yesterday |
| 7 | Search, browse, and retrieve scientific protocols from protocols.io via REST API. | ClawBio/ | 1.2k | — | ~1.9k | Automated safety check: Pass | MIT | yesterday |
| 8 | Compute HEIM diversity and equity metrics from VCF or ancestry data. | ClawBio/ | 1.2k | 4 repos | ~1.7k | Automated safety check: Pass | MIT | yesterday |
| 9 | Fetch a regional slice of plasma pQTL summary statistics from the UK Biobank Pharma Proteomics Project (UKB-PPP; Sun 2023 Nature) for a specific (protein, ancestry) measurement. | ClawBio/ | 1.2k | — | ~4.6k | Automated safety check: Pass | MIT | yesterday |
| 10 | Meta-agent that routes bioinformatics requests to specialised sub-skills. | ClawBio/ | 1.2k | 3 repos | ~2.5k | Automated safety check: Pass | MIT | yesterday |
| 11 | Ancestry decomposition PCA against the Simons Genome Diversity Project | ClawBio/ | 1.2k | 3 repos | ~1.2k | Automated safety check: Pass | MIT | yesterday |
| 12 | Shotgun metagenomics profiling — taxonomy, resistome, and functional pathways | ClawBio/ | 1.2k | 3 repos | ~2.4k | Automated safety check: Pass | MIT | yesterday |
| 13 | Semantic Similarity Index for disease research literature using PubMedBERT embeddings | ClawBio/ | 1.2k | 3 repos | ~1.4k | Automated safety check: Pass | MIT | yesterday |
| 14 | 14.Clinpgx Query the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labels | ClawBio/ | 1.2k | 3 repos | ~963 | Automated safety check: Pass | MIT | yesterday |
| 15 | 15.Drug Photo Medication photo to personalised PGx dosage card via Claude vision — snap a pill, get genotype-informed guidance | ClawBio/ | 1.2k | 3 repos | ~1.4k | Automated safety check: Pass | MIT | yesterday |
| 16 | Compare your genome to George Church (PGP-1) and estimate ancestry composition via IBS and EM admixture | ClawBio/ | 1.2k | 3 repos | ~1.2k | Automated safety check: Pass | MIT | yesterday |
| 17 | 17.Polars Bio Fast genomic interval operations (overlap, nearest, merge, coverage, cluster, complement, subtract, count-overlaps), multi-format bioinformatics I/O, DataFusion SQL, and pileup on Polars DataFrames… | ClawBio/ | 1.2k | — | ~3.4k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 18 | Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline. | ClawBio/ | 1.2k | 3 repos | ~413 | Automated safety check: Pass | MIT | yesterday |
| 19 | Galaxy tool discovery, intelligent recommendation, and execution — 8,000+ bioinformatics tools from usegalaxy.org with multi-signal scoring and workflow suggestions | ClawBio/ | 1.2k | 2 repos | ~2.4k | Automated safety check: Pass | MIT | yesterday |
| 20 | 20.Gwas Lookup Federated variant lookup across 8 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ), GTEx, and more. | ClawBio/ | 1.2k | 2 repos | ~1k | Automated safety check: Pass | MIT | yesterday |
| 21 | 21.Gwas PRs Calculate polygenic risk scores from DTC genetic data using the PGS Catalog | ClawBio/ | 1.2k | 2 repos | ~3.5k | Automated safety check: Pass | MIT | yesterday |
| 22 | Pharmacogenomic report from DTC genetic data (23andMe/AncestryDNA) — 12 genes, 31 SNPs, 51 drugs | ClawBio/ | 1.2k | 2 repos | ~1.5k | Automated safety check: Pass | MIT | yesterday |
| 23 | Unified personal genomic profile report — reads a PatientProfile JSON and synthesizes all skill results into a single "Your Genomic Profile" document. | ClawBio/ | 1.2k | 2 repos | ~2.1k | Automated safety check: Pass | MIT | yesterday |
| 24 | Semantic search across UK Biobank's 12,000+ data fields and publications — find the right variables for your research question. | ClawBio/ | 1.2k | 2 repos | ~1k | Automated safety check: Pass | MIT | yesterday |
| 25 | Render a 4-panel regional LocusCompare diagnostic for one (lead variant, exposure study, outcome study) tuple - overlays GWAS Manhattan, QTL Manhattan, GENCODE gene track, and cross-trait scatter… | ClawBio/ | 1.2k | — | ~6k | Automated safety check: Pass | MIT | yesterday |
| 26 | Find clinical trials for a gene, variant, or condition from ClinicalTrials.gov + EUCTR, with FHIR R4 output | ClawBio/ | 1.2k | 2 repos | ~3k | Automated safety check: Pass | MIT | yesterday |
| 27 | Unified analysis pipeline for affinity-based proteomics platforms — Olink (PEA, NPX) and SomaLogic SomaScan (SOMAmer, RFU). | ClawBio/ | 1.2k | 1 repo | ~1.8k | Automated safety check: Pass | MIT | yesterday |
| 28 | Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus… | ClawBio/ | 1.2k | 1 repo | ~3.4k | Automated safety check: Pass | MIT | yesterday |
| 29 | Detect Neanderthal and Denisovan introgression segments from modern human genomes | ClawBio/ | 1.2k | 1 repo | ~1.9k | Automated safety check: Pass | MIT | yesterday |
| 30 | 30.Bgpt MCP Search scientific papers via the BGPT MCP server and retrieve structured experimental data — methods, results, conclusions, quality scores, and 25+ metadata fields per paper. | ClawBio/ | 1.2k | 1 repo | ~3.2k | Automated safety check: Pass | MIT | yesterday |
| 31 | Bioconductor package discovery, workflow recommendation, setup inspection, and starter code generation grounded in official Bioconductor containers and BiocManager. | ClawBio/ | 1.2k | 1 repo | ~2.5k | Automated safety check: Pass | MIT | yesterday |
| 32 | Cell segmentation in fluorescence microscopy images. An agent skill from ClawBio/ClawBio. | ClawBio/ | 1.2k | 1 repo | ~2.1k | Automated safety check: Pass | MIT | yesterday |
| 33 | Classify germline variants from VCF/BCF files according to the ACMG/AMP 2015 28-criteria evidence framework and generate clinical-grade interpretation reports with per-variant evidence audit trails… | ClawBio/ | 1.2k | 1 repo | ~3.9k | Automated safety check: Pass | MIT | yesterday |
| 34 | Deterministic CRISPR screen hit ranking from local guide-level count tables | ClawBio/ | 1.2k | 1 repo | ~1.7k | Automated safety check: Pass | MIT | yesterday |
| 35 | 35.De Summary Summarise pre-computed differential expression results with ranked gene lists, biological themes, and publication-ready interpretation. | ClawBio/ | 1.2k | 1 repo | ~2k | Automated safety check: Pass | MIT | yesterday |
| 36 | Rich downstream visualisation and reporting for bulk RNA-seq differential expression and scRNA marker/contrast outputs. | ClawBio/ | 1.2k | 1 repo | ~1.6k | Automated safety check: Pass | MIT | yesterday |
| 37 | 37.Fastreer Phylogenetic distance matrices and trees from VCF or FASTA data using the fastreeR hybrid Java/Python toolkit (VCF2TREE, VCF2DIST, DIST2TREE, FASTA2DIST). | ClawBio/ | 1.2k | 1 repo | ~3.5k | Automated safety check: Notes | GPL-3.0 | yesterday |
| 38 | 38.Fine Mapping Statistical fine-mapping of GWAS loci using SuSiE, SuSiE-inf, and Approximate Bayes Factors to identify credible sets and posterior inclusion probabilities (PIPs) for causal variant discovery. | ClawBio/ | 1.2k | 1 repo | ~3.6k | Automated safety check: Pass | MIT | yesterday |
| 39 | 39.Flow Bio Flow.bio API bridge — authenticate, browse pipelines/samples/projects, search, upload data, launch pipeline executions, and check run status on any Flow instance. | ClawBio/ | 1.2k | 1 repo | ~2.3k | Automated safety check: Pass | MIT | yesterday |
| 40 | 40.Genome Match Score genetic compatibility across all male-female pairings in a Genomebook generation | ClawBio/ | 1.2k | 1 repo | ~653 | Automated safety check: Pass | MIT | yesterday |
| 41 | End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association testing. | ClawBio/ | 1.2k | 1 repo | ~1.4k | Automated safety check: Pass | MIT | yesterday |
| 42 | Import DRAGEN-exported Illumina result bundles into ClawBio for local tertiary analysis and downstream routing. | ClawBio/ | 1.2k | 1 repo | ~3.2k | Automated safety check: Pass | MIT | yesterday |
| 43 | Search PubMed and bioRxiv for bioinformatics literature, synthesise results into a structured report, and build a citation graph — all locally, with a reproducibility bundle. | ClawBio/ | 1.2k | 1 repo | ~2.5k | Automated safety check: Pass | MIT | yesterday |
| 44 | Two-sample Mendelian Randomisation from GWAS summary statistics with IVW, MR-Egger, weighted median/mode, and full sensitivity analysis (Cochran Q, Egger intercept, Steiger, F-statistic… | ClawBio/ | 1.2k | 1 repo | ~4.5k | Automated safety check: Pass | MIT | yesterday |
| 45 | Compute epigenetic age from DNA methylation arrays using PyAging clocks from GEO accessions or local files. | ClawBio/ | 1.2k | 1 repo | ~922 | Automated safety check: Pass | MIT | yesterday |
| 46 | Aggregates QC reports from any bioinformatics tool outputs (FastQC, fastp, STAR, Picard, samtools, etc.) into a single MultiQC HTML report plus a ClawBio markdown summary with per-sample QC metrics. | ClawBio/ | 1.2k | 1 repo | ~2.4k | Automated safety check: Pass | MIT | yesterday |
| 47 | 47.Nutrigx Personalised nutrition report from consumer genetic data (23andMe, AncestryDNA, VCF) — interrogates nutritionally-relevant SNPs and generates actionable dietary guidance, all computed locally. | ClawBio/ | 1.2k | 1 repo | ~3.7k | Automated safety check: Pass | MIT | yesterday |
| 48 | Compute organ-specific biological age from Olink proteomic data using Goeminne et al. | ClawBio/ | 1.2k | 1 repo | ~2.9k | Automated safety check: Pass | MIT | yesterday |
Questions, answered from the data.
What is the best skill by ClawBio?
Eqtl Catalogue Region Fetch from ClawBio/ClawBio ranks first of the 99 skills by ClawBio listed here, with the highest score: its repository has 1.2k GitHub stars, 1 other GitHub owner carry a copy, its SKILL.md loads about 4.3k tokens and it passes the automated safety check with no findings. Next come Xena Tcga Gene Query and Gwas Catalog Region Fetch.
Are ClawBio's skills official?
None yet. All 99 skills by ClawBio listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.