Study
alaliqing/claude-paper
A skill your agent uses when the user wants to read, study, analyze, or deeply understand a research paper (PDF).
Generates professional clinical PDF reports in English from WES (Whole Exome Sequencing) data with clinical interpretation summary, pharmacogenomic alerts, and follow-up recommendations.
Install Wes Clinical Report En
$ npx skills add ClawBio/ClawBio --skill wes-clinical-report-en -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install ClawBio/ClawBio wes-clinical-report-en --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/wes-clinical-report-en .claude/skills/wes-clinical-report-en && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "wes-clinical-report-en" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/wes-clinical-report-en into .claude/skills/wes-clinical-report-en/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wes-clinical-report-en", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/ClawBio/ClawBio/tree/main/skills/wes-clinical-report-enType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add ClawBio/ClawBio --skill wes-clinical-report-en -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install ClawBio/ClawBio wes-clinical-report-en --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/wes-clinical-report-en .agents/skills/wes-clinical-report-en && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "wes-clinical-report-en" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/wes-clinical-report-en into .agents/skills/wes-clinical-report-en/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wes-clinical-report-en", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ClawBio/ClawBio --skill wes-clinical-report-en -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install ClawBio/ClawBio wes-clinical-report-en --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/wes-clinical-report-en .cursor/skills/wes-clinical-report-en && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "wes-clinical-report-en" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/wes-clinical-report-en into .cursor/skills/wes-clinical-report-en/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wes-clinical-report-en", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/ClawBio/ClawBio.git --path skills/wes-clinical-report-en--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add ClawBio/ClawBio --skill wes-clinical-report-en -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install ClawBio/ClawBio wes-clinical-report-en --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/wes-clinical-report-en .gemini/skills/wes-clinical-report-en && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "wes-clinical-report-en" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/wes-clinical-report-en into .gemini/skills/wes-clinical-report-en/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wes-clinical-report-en", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install ClawBio/ClawBio wes-clinical-report-enInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add ClawBio/ClawBio --skill wes-clinical-report-en -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/wes-clinical-report-en .github/skills/wes-clinical-report-en && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "wes-clinical-report-en" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/wes-clinical-report-en into .github/skills/wes-clinical-report-en/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wes-clinical-report-en", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ClawBio/ClawBio --skill wes-clinical-report-en -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install ClawBio/ClawBio wes-clinical-report-en --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ClawBio/ClawBio.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/wes-clinical-report-en .opencode/skills/wes-clinical-report-en && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "wes-clinical-report-en" agent skill from https://github.com/ClawBio/ClawBio/tree/main/skills/wes-clinical-report-en into .opencode/skills/wes-clinical-report-en/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "wes-clinical-report-en", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
wes-clinical-report-en- GitHub stars
- 1.2k
- Used in
- 1 other repo
- Token cost
- ~1.8k tokens
- SKILL.md length
- 585 words
- Files
- 5
- Skills in repo
- 104
- Repo updated
- First seen
- Licence
- Proprietary
At a glance
Generates professional clinical PDF reports in English from WES (Whole Exome Sequencing) data with clinical interpretation summary, pharmacogenomic alerts, and follow-up recommendations.
- Works in 9 steps: Parse WES markdown report (structured… → Extract KPI metrics from Exome Summary → Extract pathogenic variants, PGx alerts,… → …
- Tasks that involve Clinical and healthcare research
- SKILL.md covers Trigger, Scope, Workflow and Capabilities, plus 11 more sections
- Runs Python scripts from its folder; calls python
What it does
Wes Clinical Report En is an agent skill from ClawBio/ClawBio. Generates professional clinical PDF reports in English from WES (Whole Exome Sequencing) data with clinical interpretation summary, pharmacogenomic alerts, and follow-up recommendations.
Its SKILL.md is about 1.8k tokens, which your agent loads only when the skill is triggered. The skill folder holds 6 other files (for example `examples/demo_WES_Report.md`, `tests/test_wes_clinical_report_en.py` and `wes_clinical_report_en.py`).
It sits in Research & Science, covering Clinical and healthcare research and PDF. The repository describes itself as: 🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
When your agent uses it
- Tasks that involve Clinical and healthcare research
- Tasks that involve PDF
Example prompts
- “Use the wes-clinical-report-en skill to generate professional clinical PDF reports in English from WES (Whole Exome Sequencing) data with clinical…”
- “/wes-clinical-report-en”
Requirements
- Python 3
Workflow steps
9 steps, taken from the first numbered list in SKILL.md.
- Parse WES markdown report (structured sections 1-7)
- Extract KPI metrics from Exome Summary
- Extract pathogenic variants, PGx alerts, rare damaging variants
- Build interpretive summary paragraph
- Render all sections as styled PDF with clinical tables
- Add ancestry estimation (section 8) if data available
- Add limitations section (section 9)
- Add disclaimer and report metadata
- Output PDF to specified directory
What it can do on your machine
Read from SKILL.md and the folder at commit dece754. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships script files (Python), which the agent can run.
Shell commands in SKILL.md call:
python
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Wes Clinical Report En loads about 1.8k tokens when it runs. Until then it costs about 52 tokens; SKILL.md has 585 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Its licence (Proprietary) doesn't allow us to republish the file, so here is its outline and opening line. It has 585 words (~1,843 tokens).
“Skill for generating professional clinical PDF reports in English from whole exome sequencing (WES) data. Designed for Novogene WES data (GATK + ANNOVAR pipeline) but adaptable to any WES pipeline with equivalent annotations.”
- name
- wes-clinical-report-en
- license
- PROPRIETARY
- metadata.version
- 1.0.0
- metadata.author
- Manuel Corpas
- metadata.tags
- WES, exome, clinical-report, english, pharmacogenomics, PDF, ANNOVAR
Files
SKILL.md and 4 other files in skills/wes-clinical-report-en of ClawBio/ClawBio.
- SKILL.md
- examples/demo_WES_Report.md
- requirements.txt
- tests/test_wes_clinical_report_en.py
- wes_clinical_report_en.py
Open the folder on GitHubat commit dece754
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in ClawBio/ClawBio, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Wes Clinical Report En next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Wes Clinical Report En this skillClawBio/ClawBio | 1.2k | 1 repos | ~1.8k | Automated safety check: Pass | Proprietary | |
| Studyalaliqing/claude-paper | 343 | — | ~2.5k | Automated safety check: Notes | MIT | |
| Paper ReadingEdwardxlai/easyread | 885 | — | ~567 | Automated safety check: Pass | MIT | |
| Ref Downloaderltczding-gif/ref-downloader | 139 | — | ~5.9k | Automated safety check: Pass | MIT | |
| Paper Readingsodalone/paper-reading-skill | 142 | — | ~1.3k | Automated safety check: Pass | None | |
| Obsidian Paper VaultAperivue/medsci-skills | 333 | — | ~1.6k | Automated safety check: Pass | MIT |
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Related
Categories
Questions about Wes Clinical Report En
What does Wes Clinical Report En do?
Generates professional clinical PDF reports in English from WES (Whole Exome Sequencing) data with clinical interpretation summary, pharmacogenomic alerts, and follow-up recommendations. Wes Clinical Report En is an agent skill from ClawBio/ClawBio. Generates professional clinical PDF reports in English from WES (Whole Exome Sequencing) data with clinical interpretation summary, pharmacogenomic alerts, and follow-up recommendations.
When should I use Wes Clinical Report En?
Wes Clinical Report En fits situations like: tasks that involve Clinical and healthcare research; tasks that involve PDF.
How do I install Wes Clinical Report En in Claude Code?
Run `npx skills add ClawBio/ClawBio --skill wes-clinical-report-en -a claude-code`. Or copy the skill folder (skills/wes-clinical-report-en in ClawBio/ClawBio) into .claude/skills/wes-clinical-report-en in your project. Claude Code loads it when a task matches its description.
How do I install Wes Clinical Report En in Codex?
Run `npx skills add ClawBio/ClawBio --skill wes-clinical-report-en -a codex`. Or copy the skill folder (skills/wes-clinical-report-en in ClawBio/ClawBio) into .agents/skills/wes-clinical-report-en in your project. Codex loads it when a task matches its description.
Can I use Wes Clinical Report En in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add ClawBio/ClawBio --skill wes-clinical-report-en -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/wes-clinical-report-en, .gemini/skills/wes-clinical-report-en, .github/skills/wes-clinical-report-en and .opencode/skills/wes-clinical-report-en in your project.
What does Wes Clinical Report En need to run?
Going by SKILL.md and its folder, Wes Clinical Report En needs Python for the scripts in its folder and the command-line tools its instructions call (python). Our summary lists: Python 3.
Does Wes Clinical Report En access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Wes Clinical Report En safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Wes Clinical Report En use?
Wes Clinical Report En carries a proprietary licence (declared in SKILL.md). It is published on GitHub, but it is not open source: read the licence file before using or sharing it.
How many tokens does Wes Clinical Report En use?
About 1.8k tokens (SKILL.md is roughly 7.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Wes Clinical Report En?
Skills that share tags, products or a category with Wes Clinical Report En: Study (alaliqing/claude-paper, 343 stars), Paper Reading (Edwardxlai/easyread, 885 stars), Ref Downloader (ltczding-gif/ref-downloader, 139 stars) and Paper Reading (sodalone/paper-reading-skill, 142 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Wes Clinical Report En?
ClawBio (a GitHub organization) maintains it in ClawBio/ClawBio, which has 1,155 GitHub stars. The repository holds 104 skills in this directory. The repository was last updated on October 9, 2026.
Source: ClawBio/ClawBio on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.