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Clinical and healthcare research
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Query ClinicalTrials.gov via APIv2. An agent skill from google-deepmind/science-skills. | google-deepmind/ | 3.2k | 2 repos | ~3.2k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 2 | Guides an agent through reproducing papers built on the CHARLS health and retirement survey, from variable mapping to cognition, depression and isolation scores. | xjtulyc/ | 617 | 1 repo | ~1.8k | Automated safety check: Pass | No licence | 7 mo ago |
| 3 | Analyse whether a SQL query is portable across database implementations using sqlglot transpilation. | HL7/ | 151 | — | ~512 | Automated safety check: Pass | Unknown | 5 days ago |
| 4 | Routes bioinformatics, drug discovery, clinical and multi-omics tasks from a chat interface to Claude Code sessions running K-Dense scientific skills, with a live dashboard per task. | xjtulyc/ | 617 | 1 repo | ~2k | Automated safety check: Pass | No licence | 7 mo ago |
| 5 | A skill your agent uses when the user asks to write or draft an ORIGINAL RESEARCH ARTICLE — IMRaD paper, conference paper, short/workshop paper, 研究论文/期刊论文/会议论文 — reporting their own completed… | luwill/ | 862 | — | ~1.9k | Automated safety check: Pass | No licence | yesterday |
| 6 | Suggests candidate ICD-10-CM diagnosis and ICD-10-PCS procedure codes for clinical text extracted by OpenMed, with rationale for a certified coder to review. | maziyarpanahi/ | 5.5k | — | ~2k | Automated safety check: Pass | Apache-2.0 | today |
| 7 | Create and maintain one family medical brief from reports, notes, or partial information. | petergyang/ | 147 | — | ~2.7k | Automated safety check: Pass | MIT | 1 mo ago |
| 8 | A skill your agent uses when the user asks to write or draft a PhD / doctoral research proposal, research plan, 研究计划书, or 开题报告 — a forward-looking plan of background, gap, research questions… | luwill/ | 862 | — | ~4.5k | Automated safety check: Notes | No licence | yesterday |
| 9 | Maps OpenMed-extracted, terminology-coded conditions, drugs and measurements into OMOP CDM v5.4 tables for OHDSI and ATLAS analytics. | maziyarpanahi/ | 5.5k | — | ~1.9k | Automated safety check: Pass | Apache-2.0 | today |
| 10 | Write comprehensive literature reviews for medical imaging AI research. | LeonChaoX/ | 944 | 3 repos | ~1.1k | Automated safety check: Notes | MIT | 2 mo ago |
| 11 | Generates comprehensive drug research reports with compound disambiguation, evidence grading, and mandatory completeness sections. | lamm-mit/ | 246 | 3 repos | ~1.7k | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 12 | Format and structurally validate local treatment-plan documentation after clinical decisions have already been supplied and verified by authorized licensed professionals. | K-Dense-AI/ | 2.4k | 1 repo | ~2.7k | Automated safety check: Pass | MIT | 2 days ago |
| 13 | A skill your agent uses when interpreting genomic variants from VCF files, performing clinical variant classification using ClinVar/VEP annotations, analyzing allele frequencies against population… | aws-samples/ | 274 | — | ~1.5k | Automated safety check: Pass | MIT-0 | 9 days ago |
| 14 | FHIR API development guide for building healthcare endpoints. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.5k | Automated safety check: Pass | No licence | 2 mo ago |
| 15 | Finds social risks such as housing instability or food insecurity in clinical notes and proposes matching ICD-10-CM Z-codes for a coder to confirm. | maziyarpanahi/ | 5.5k | — | ~1.9k | Automated safety check: Pass | Apache-2.0 | today |
| 16 | A skill your agent uses when a developer wants to build a new healthcare or life sciences agent, structure tools and system prompts for an HCLS workflow, or create a Strands agent with… | aws-samples/ | 274 | — | ~885 | Automated safety check: Pass | MIT-0 | 9 days ago |
| 17 | Reads, edits, anonymizes and converts DICOM medical imaging files with pydicom, including pixel data extraction and compressed transfer syntaxes. | davila7/ | 33k | 11 repos | ~3.3k | Automated safety check: Pass | MIT | today |
| 18 | A skill your agent uses when the user asks to plan, conduct, document, synthesize, or draft a medical imaging AI narrative review or method survey, scoping review, or systematic review with… | luwill/ | 862 | — | ~4k | Automated safety check: Pass | No licence | yesterday |
| 19 | 19.Rounding Audit R code that prepares CSR/TLF statistics for SAS-compatible rounding compliance (ties away from zero, round-once-at-display, fixed trailing-zero precision). | RConsortium/ | 120 | — | ~3.8k | Automated safety check: Pass | MIT | 7 days ago |
| 20 | 20.Fhir API Expert guidance for implementing FHIR RESTful API servers and clients following the HL7 FHIR specification. | aehrc/ | 137 | — | ~1.5k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 21 | Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 22 | Query ClinicalTrials.gov via API v2. An agent skill from davila7/claude-code-templates. | davila7/ | 33k | 12 repos | ~3.7k | Automated safety check: Pass | MIT | today |
| 23 | Queries the openFDA API from Python for drug, device, food and veterinary data: adverse events, recalls, labels, approvals, NDC and UNII lookups. | davila7/ | 33k | 11 repos | ~3.6k | Automated safety check: Pass | MIT | today |
| 24 | Processes digital pathology whole slide images with histolab: tissue detection, mask creation, tile extraction and dataset preparation for deep learning. | davila7/ | 33k | 11 repos | ~5.1k | Automated safety check: Pass | MIT | today |
| 25 | Processes physiological signals with NeuroKit2 in Python: ECG, PPG, EEG, EDA, respiration, EMG and EOG, including HRV, events and complexity measures. | davila7/ | 33k | 11 repos | ~3k | Automated safety check: Pass | MIT | today |
| 26 | 26.Pathml Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. | davila7/ | 33k | 11 repos | ~1.9k | Automated safety check: Pass | MIT | today |
| 27 | Builds machine learning pipelines on clinical data with PyHealth: EHR datasets, prediction tasks, medical code mapping, healthcare models and evaluation. | davila7/ | 33k | 11 repos | ~4.4k | Automated safety check: Pass | MIT | today |
| 28 | Expert guidance for implementing FHIR Bulk Data Access (Flat FHIR) following the HL7 specification. | aehrc/ | 137 | — | ~1.8k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 29 | Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation… | davila7/ | 33k | 11 repos | ~9.9k | Automated safety check: Notes | MIT | today |
| 30 | Prepare and validate research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance artifacts. | K-Dense-AI/ | 2.4k | — | ~3.3k | Automated safety check: Pass | MIT | 2 days ago |
| 31 | FHIR RESTful search specification expert with access to the official HL7 search specification text and the formal SearchParameter registry. | aehrc/ | 137 | — | ~649 | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 32 | Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. | ynulihao/ | 618 | 13 repos | ~13k | Automated safety check: Notes | No licence | 7 mo ago |
| 33 | Search PubMed for scientific literature, including published clinical trials. | google-deepmind/ | 3.2k | 2 repos | ~2.1k | Automated safety check: Notes | Apache-2.0 | yesterday |
| 34 | Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and… | ynulihao/ | 618 | 12 repos | ~6.5k | Automated safety check: Notes | No licence | 7 mo ago |
| 35 | Transform GWAS signals into actionable drug targets and repurposing opportunities. | wu-yc/ | 1.1k | 2 repos | ~4.7k | Automated safety check: Pass | No licence | 6 mo ago |
| 36 | Create safety-bounded draft structures and run local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research reports. | K-Dense-AI/ | 2.4k | 1 repo | ~3.7k | Automated safety check: Pass | MIT | 2 days ago |
| 37 | Packages standalone FHIR R4 resources from OpenMed output into one transaction Bundle with stable fullUrls and rewritten references, ready to post to a FHIR server. | maziyarpanahi/ | 5.5k | — | ~2.2k | Automated safety check: Pass | Apache-2.0 | today |
| 38 | Generate a therapeutic indication dossier. An agent skill from JimLiu/science-skills. | JimLiu/ | 228 | 4 repos | ~1.4k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 39 | Expert guidance for implementing FHIR servers using HAPI FHIR Plain Server framework. | aehrc/ | 137 | — | ~2.6k | Automated safety check: Pass | Apache-2.0 | 3 days ago |
| 40 | Think and work like an expert Biomedical Imaging Scientist. An agent skill from K-Dense-AI/scientific-agents. | K-Dense-AI/ | 200 | — | ~4.1k | Automated safety check: Pass | MIT | 8 days ago |
| 41 | 41.Pacsomatic Prepares and launches nf-core/pacsomatic matched tumor-normal PacBio HiFi genomics workflows from unaligned BAM inputs. | K-Dense-AI/ | 48k | 1 repo | ~1.6k | Automated safety check: Pass | MIT | 6 days ago |
| 42 | Medical data workflow guide for DICOM metadata inspection and basic de-identification, physiological signal analysis with NeuroKit2, and cohort-table profiling for clinical research datasets. | DrugClaw/ | 126 | — | ~1.3k | Automated safety check: Pass | Apache-2.0 | 6 mo ago |
| 43 | A skill your agent uses when drafting clinical trial protocol sections (objectives, background, study design) grounded in ICH guidelines (E6, E8, E9) and FDA regulations (21 CFR Part 312). | aws-samples/ | 274 | — | ~1.4k | Automated safety check: Pass | MIT-0 | 9 days ago |
| 44 | Query the Open Targets Platform for drug-target-disease associations. | QSong-github/ | 116 | 1 repo | ~601 | Automated safety check: Pass | No licence | 1 mo ago |
| 45 | 45.Pyhealth Builds and validates PyHealth clinical machine-learning pipelines for EHR, signals, imaging, and medical codes. | K-Dense-AI/ | 48k | 1 repo | ~2.1k | Automated safety check: Pass | MIT | 6 days ago |
| 46 | Prepares and validates research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance artifacts. | K-Dense-AI/ | 48k | 1 repo | ~3.5k | Automated safety check: Pass | MIT | 6 days ago |
| 47 | Clinical Decision Support System (CDSS) development patterns. | affaan-m/ | 277k | 1 repo | ~2.4k | Automated safety check: Pass | MIT | today |
| 48 | EMR/EHR development patterns for healthcare applications. An agent skill from affaan-m/ECC. | affaan-m/ | 277k | 1 repo | ~1.6k | Automated safety check: Pass | MIT | today |