Repository
JimLiu/science-skills agent skills
- skills
- 27
- GitHub stars
- 228
- Stars
- 228 (53 forks)
- Licence
- No licence
- Last push
- Jul 2026
- Created
- Jul 2026
Install all skills
npx skills add JimLiu/science-skillsAdd --skill <name> for a single skill and -a <agent> to choose the agent (see the agent guides).
Skills in JimLiu/science-skills, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | 1.Esmfold2 Biohub ESMFold2 / ESMFold2-Fast all-atom co-folding (Candido et al. | JimLiu/ | 228 | 4 repos | ~2.5k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 2 | Set up a compute environment on a remote provider so Claude Science jobs can run there. | JimLiu/ | 228 | 2 repos | ~4.4k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 3 | 3.Borzoi Predict genome-wide functional tracks (RNA-seq, CAGE, DNase, ChIP) from DNA sequence with Borzoi. | JimLiu/ | 228 | 4 repos | ~973 | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 4 | 4.Evo2 Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model. | JimLiu/ | 228 | 4 repos | ~1.3k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 5 | Embed proteins with Meta AI's ESM-2 (fair-esm package). An agent skill from JimLiu/science-skills. | JimLiu/ | 228 | 4 repos | ~1.2k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 6 | Structure prediction using OpenFold3, an open-weights PyTorch reproduction of AlphaFold3 from the AlQuraishi Lab. | JimLiu/ | 228 | 4 repos | ~1.8k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 7 | 7.Scgpt Embed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology. | JimLiu/ | 228 | 4 repos | ~1.3k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 8 | Register a model service in the managed family — a local model server container the daemon starts/stops on demand, or a remote upstream model API (https). | JimLiu/ | 228 | 2 repos | ~2.7k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 9 | 9.Diffdock Predict small-molecule binding poses with DiffDock-L (Corso et al. | JimLiu/ | 228 | 4 repos | ~1.1k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 10 | 10.PDF Explore A skill your agent uses when the user has attached a PDF, paper, report, or other document and the answer needs content from more than one place in it: summarize the methods or any other section… | JimLiu/ | 228 | 2 repos | ~3.6k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 11 | Generate a therapeutic indication dossier. An agent skill from JimLiu/science-skills. | JimLiu/ | 228 | 4 repos | ~1.4k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 12 | 12.Alphafold2 Predict protein structure for monomers and multimers with AlphaFold2 via the ColabFold runner (Mirdita et al. | JimLiu/ | 228 | 4 repos | ~1.2k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 13 | 13.Boltz Structure prediction for protein, nucleic-acid, and small-molecule complexes with Boltz-2 (Passaro & Wohlwend et al. | JimLiu/ | 228 | 4 repos | ~1.3k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 14 | 14.Chai1 Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai Discovery 2024, github.com/chaidiscovery/chai-lab). | JimLiu/ | 228 | 4 repos | ~1.2k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 15 | 15.Ligandmpnn Inverse-fold a backbone with ligand, nucleic-acid, and metal context using LigandMPNN (Dauparas et al. | JimLiu/ | 228 | 4 repos | ~1.5k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 16 | 16.Proteinmpnn Inverse-fold a protein backbone (PDB structure) into amino-acid sequence with ProteinMPNN (Dauparas et al. | JimLiu/ | 228 | 4 repos | ~1.1k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 17 | 17.Scvi Tools Probabilistic single-cell RNA-seq with scvi-tools — scVI for a batch-corrected latent space, scANVI for semi-supervised label transfer, and Bayesian differential expression. | JimLiu/ | 228 | 4 repos | ~2.1k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 18 | 18.Solublempnn Inverse-fold a backbone with SolubleMPNN — ProteinMPNN retrained on a soluble-PDB subset (Dauparas et al. | JimLiu/ | 228 | 4 repos | ~1.1k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 19 | 19.Figure Style Publication-grade figure correctness and legibility rules. An agent skill from JimLiu/science-skills. | JimLiu/ | 228 | 3 repos | ~4.1k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 20 | Find, verify, and synthesize scientific literature — from "what's the seminal paper for X" through full multi-source reviews. | JimLiu/ | 228 | 4 repos | ~2.7k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 21 | Compose one publication-grade multi-panel figure. An agent skill from JimLiu/science-skills. | JimLiu/ | 228 | 2 repos | ~1.7k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 22 | Claude Science's own session database schema and SDK surface for introspection via host.query(). | JimLiu/ | 228 | 2 repos | ~3.4k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 23 | Run GPU jobs on the user's own Modal account via host.compute.create('byoc:modal', ...). | JimLiu/ | 228 | 2 repos | ~11k | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 24 | Judge and reshape the STORY a paper's figures tell. An agent skill from JimLiu/science-skills. | JimLiu/ | 228 | 2 repos | ~669 | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 25 | 25.Customize Create, configure, and maintain custom agent profiles and author new skills via the repl tool. | JimLiu/ | 228 | 2 repos | ~5.4k | Automated safety check: Warn | Apache-2.0 | 3 mo ago |
| 26 | Call a registered model endpoint over its native HTTP API from the endpoint's scoped inference kernel (BASEURL preloaded). | JimLiu/ | 228 | 3 repos | ~435 | Automated safety check: Pass | Apache-2.0 | 3 mo ago |
| 27 | Submit→waitfornotification→harvest workflow for the user's SSH/SLURM hosts. | JimLiu/ | 228 | 3 repos | ~4.9k | Automated safety check: Warn | Apache-2.0 | 3 mo ago |
Questions, answered from the data.
What is the best skill in JimLiu/science-skills?
Esmfold2 from JimLiu/science-skills ranks first of the 27 skills in JimLiu/science-skills listed here, with the highest score: its repository has 228 GitHub stars, 4 other GitHub owners carry a copy, its SKILL.md loads about 2.5k tokens and it passes the automated safety check with no findings. Next come Compute Env Setup and Borzoi.
Are the skills in JimLiu/science-skills official?
None yet. All 27 skills in JimLiu/science-skills listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How do I install all skills from JimLiu/science-skills?
Run npx skills add JimLiu/science-skills in your project: the open-source skills CLI installs the repository's skills into your coding agent's skills folder. To install a single skill, open its page here for the exact command.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.