Agent skill

Biomedical Analysis Dispatch

by xjtulyc in xjtulyc/MedgeClaw

Routes bioinformatics, drug discovery, clinical and multi-omics tasks from a chat interface to Claude Code sessions running K-Dense scientific skills, with a live dashboard per task.

No licenceAuto-check passedResearch & Science

Install Biomedical Analysis Dispatch

skills CLI
$ npx skills add xjtulyc/MedgeClaw --skill biomed-dispatch -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install xjtulyc/MedgeClaw biomed-dispatch --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/xjtulyc/MedgeClaw.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/biomed-dispatch .claude/skills/biomed-dispatch && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
biomed-dispatch
GitHub stars
617
Used in
1 other repo
Token cost
~2k tokens
SKILL.md length
396 words
Files
1
Skills in repo
6
Repo updated
First seen
Licence
None found

At a glance

Routes bioinformatics, drug discovery, clinical and multi-omics tasks from a chat interface to Claude Code sessions running K-Dense scientific skills, with a live dashboard per task.

  • Works in 8 steps: Identify task type from the user's request → Locate data files — check if user… → Set up Dashboard — every analysis task… → …
  • Running an RNA-seq, variant calling or other bioinformatics analysis from a chat request
  • SKILL.md covers Purpose, When to use, Workflow and 科学写作任务的特殊处理, plus 4 more sections
  • Calls claude, python and uv

What it does

This skill bridges a conversational interface and a scientific execution environment covering RNA-seq, single-cell RNA-seq, variant calling, molecular docking, virtual screening, ADMET prediction, survival analysis, clinical trial search, proteomics, metabolomics, pathway enrichment, DICOM processing, digital pathology, literature review and scientific writing. It identifies the task type, locates input data under a workspace data folder (asking the user if no path is given), and sets up a live dashboard by copying a dashboard template into a per-task folder with output and dashboard subfolders.

Long tasks with several stages, such as literature search, outline, body text, figures and PDF compilation, are split into separate Claude Code sessions, each doing one stage, because a single session running past about ten minutes tends to stall. Each session's prompt names the exact scientific skill file to read first, the input and output paths, and the dashboard state file to update after each step, with table data referenced by file path rather than inlined and image paths given as absolute paths.

Execution runs through the Claude Code CLI, preferably in stream-json mode with hooks, and progress is checked through the hooks' progress file, restarting a run if it stalls for more than five minutes.

When your agent uses it

  • Running an RNA-seq, variant calling or other bioinformatics analysis from a chat request
  • Dispatching a drug discovery task such as molecular docking or ADMET prediction
  • Splitting a multi-stage scientific writing task into separate Claude Code sessions
  • Setting up a live dashboard to track a long-running analysis

Example prompts

  • “Run differential expression analysis on the RNA-seq data in /workspace/data/experiment1 with DESeq2.”
  • “Dock this ligand against the target protein and estimate ADMET properties.”
  • “Search the literature on this gene, write an outline, then draft the paper section by section.”

Requirements

  • The Claude Code CLI with K-Dense Scientific Skills installed
  • Data files under a workspace data directory

Workflow steps

8 steps, taken from the first numbered list in SKILL.md.

  1. Identify task type from the user's request
  2. Locate data files — check if user mentioned a file path; if not, list /workspace/data/ and confirm with user
  3. Set up Dashboard — every analysis task must have a live dashboard
  4. 拆分长任务 — 如果任务包含多个阶段(如:文献搜索 + 写大纲 + 写正文 + 做图 + 编译),必须拆成多个 Claude Code session,每个 session 只做一件事
  5. Construct the Claude Code prompt — 短而聚焦,包含 dashboard 更新指令
  6. Execute via Claude Code CLI(推荐 stream-json + hooks)
  7. Monitor — 用 hooks 的 progress.json 判断进度
  8. Report back — 总结结果,指向 dashboard URL

What it can do on your machine

Read from SKILL.md and the folder at commit fef51d3. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Shell commands in SKILL.md call:

    • claude
    • python
    • uv

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md. Its commands use uv, which can reach the network depending on how they are called.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Biomedical Analysis Dispatch loads about 2k tokens when it runs. Until then it costs about 107 tokens; SKILL.md has 396 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~107
When it runs · the whole SKILL.md, loaded when a task matches
~2k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 396 words (~1,959 tokens).

“Bridge between the OpenClaw conversational interface and Claude Code's scientific execution environment (K-Dense Scientific Skills).”

— opening of SKILL.md by xjtulyc
name
biomed-dispatch
version
1.0.0

Read the full SKILL.md on GitHub

Files

Just SKILL.md in skills/biomed-dispatch of xjtulyc/MedgeClaw.

Open the folder on GitHubat commit fef51d3

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in xjtulyc/MedgeClaw, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Biomedical Analysis Dispatch next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Biomedical Analysis Dispatch compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Biomedical Analysis Dispatch this skillxjtulyc/MedgeClaw6171 repos~2kAutomated safety check: PassNone
Hcls Build Agentaws-samples/amazon-bedrock-agents-healthcare-lifesciences274—~885Automated safety check: PassMIT-0
Hcls Get Startedaws-samples/amazon-bedrock-agents-healthcare-lifesciences274—~607Automated safety check: PassMIT-0
Tooluniverselamm-mit/scienceclaw246—~950Automated safety check: PassApache-2.0
Drug Researchlamm-mit/scienceclaw2463 repos~1.7kAutomated safety check: PassApache-2.0
Genomics Variant Interpretationaws-samples/amazon-bedrock-agents-healthcare-lifesciences274—~1.5kAutomated safety check: PassMIT-0

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Questions about Biomedical Analysis Dispatch

What does Biomedical Analysis Dispatch do?

Routes bioinformatics, drug discovery, clinical and multi-omics tasks from a chat interface to Claude Code sessions running K-Dense scientific skills, with a live dashboard per task. This skill bridges a conversational interface and a scientific execution environment covering RNA-seq, single-cell RNA-seq, variant calling, molecular docking, virtual screening, ADMET prediction, survival analysis, clinical trial search, proteomics, metabolomics, pathway enrichment, DICOM processing, digital pathology, literature review and scientific writing. It identifies the task type, locates input data under a workspace data folder (asking the user if no path is given), and sets up a live dashboard by copying a dashboard template into a per-task folder with output and dashboard subfolders.

When should I use Biomedical Analysis Dispatch?

Biomedical Analysis Dispatch fits situations like: running an RNA-seq, variant calling or other bioinformatics analysis from a chat request; dispatching a drug discovery task such as molecular docking or ADMET prediction; splitting a multi-stage scientific writing task into separate Claude Code sessions; setting up a live dashboard to track a long-running analysis.

How do I install Biomedical Analysis Dispatch in Claude Code?

Run `npx skills add xjtulyc/MedgeClaw --skill biomed-dispatch -a claude-code`. Or copy the skill folder (skills/biomed-dispatch in xjtulyc/MedgeClaw) into .claude/skills/biomed-dispatch in your project. Claude Code loads it when a task matches its description.

How do I install Biomedical Analysis Dispatch in Codex?

Run `npx skills add xjtulyc/MedgeClaw --skill biomed-dispatch -a codex`. Or copy the skill folder (skills/biomed-dispatch in xjtulyc/MedgeClaw) into .agents/skills/biomed-dispatch in your project. Codex loads it when a task matches its description.

Can I use Biomedical Analysis Dispatch in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add xjtulyc/MedgeClaw --skill biomed-dispatch -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/biomed-dispatch, .gemini/skills/biomed-dispatch, .github/skills/biomed-dispatch and .opencode/skills/biomed-dispatch in your project.

What does Biomedical Analysis Dispatch need to run?

Going by SKILL.md and its folder, Biomedical Analysis Dispatch needs the command-line tools its instructions call (claude, python and uv). Our summary lists: The Claude Code CLI with K-Dense Scientific Skills installed; Data files under a workspace data directory.

Does Biomedical Analysis Dispatch access the network?

SKILL.md contains no URLs. Its commands use uv, which can reach the network depending on how they are called. This is read from the text; nothing was executed.

Is Biomedical Analysis Dispatch safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Biomedical Analysis Dispatch use?

No licence was found for Biomedical Analysis Dispatch or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Biomedical Analysis Dispatch use?

About 2k tokens (SKILL.md is roughly 7.8k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Biomedical Analysis Dispatch?

Skills that share tags, products or a category with Biomedical Analysis Dispatch: Hcls Build Agent (aws-samples/amazon-bedrock-agents-healthcare-lifesciences, 274 stars), Hcls Get Started (aws-samples/amazon-bedrock-agents-healthcare-lifesciences, 274 stars), Tooluniverse (lamm-mit/scienceclaw, 246 stars) and Drug Research (lamm-mit/scienceclaw, 246 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Biomedical Analysis Dispatch?

xjtulyc (a GitHub user) maintains it in xjtulyc/MedgeClaw, which has 617 GitHub stars. The repository holds 6 skills in this directory. The repository was last updated on March 12, 2026.

Source: xjtulyc/MedgeClaw on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.