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Agent skill

Clinical Decision Support

by ynulihao in ynulihao/AgentSkillOS

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and…

No licenceAuto-check: notesResearch & Science

Install Clinical Decision Support

skills CLI
$ npx skills add ynulihao/AgentSkillOS --skill clinical-decision-support -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install ynulihao/AgentSkillOS clinical-decision-support --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/ynulihao/AgentSkillOS.git skills-src && mkdir -p .claude/skills && cp -r skills-src/data/skill_seeds/clinical-decision-support .claude/skills/clinical-decision-support && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
clinical-decision-support
GitHub stars
618
Used in
12 other repos
Token cost
~6.5k tokens
SKILL.md length
2,390 words
Files
1
Skills in repo
26
Repo updated
First seen
Licence
None found

At a glance

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and…

  • Works in 2 steps: Patient Cohort Analysis -… → Treatment Recommendation Reports -…
  • Tasks that involve Clinical and healthcare research
  • SKILL.md covers Description, Capabilities, Pharmaceutical and Research… and When to Use, plus 11 more sections
  • Calls python

What it does

Clinical Decision Support is an agent skill from ynulihao/AgentSkillOS. Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical…

Its SKILL.md is about 6.5k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.

It sits in Research & Science, covering Clinical and healthcare research. It works with LaTeX. The repository describes itself as: Build your agent from 200,000+ skills via skill RETRIEVAL & ORCHESTRATION.

When your agent uses it

  • Tasks that involve Clinical and healthcare research

Example prompts

  • “/clinical-decision-support”

Requirements

  • Python 3
  • Pre-approved tools (allowed-tools): Read, Write, Edit, Bash

Workflow steps

2 steps, taken from the first numbered list in SKILL.md.

  1. Patient Cohort Analysis - Biomarker-stratified group analyses with statistical outcome comparisons
  2. Treatment Recommendation Reports - Evidence-based clinical guidelines with GRADE grading and decision algorithms

What it can do on your machine

Read from SKILL.md and the folder at commit c3cfae1. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves these tools, so the agent can use them without asking each time:

    • Read
    • Write
    • Edit
    • Bash

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Shell commands in SKILL.md call:

    • python

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Clinical Decision Support loads about 6.5k tokens when it runs. Until then it costs about 144 tokens; SKILL.md has 2,390 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~144
When it runs · the whole SKILL.md, loaded when a task matches
~6.5k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check: notes

The automated check noted patterns worth knowing about, such as sudo or a known installer.

  • NotePre-approves every shell command (allowed-tools: Bash)SKILL.md
    allowed-tools: Read, Write, Edit, Bash

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 2,390 words (~6,550 tokens).

“Generate professional clinical decision support (CDS) documents for pharmaceutical companies, clinical researchers, and medical decision-makers. This skill specializes in analytical, evidence-based documents that inform treatment strategies and drug development:”

— opening of SKILL.md by ynulihao
name
clinical-decision-support
allowed-tools
Read, Write, Edit, Bash

Read the full SKILL.md on GitHub

Files

Just SKILL.md in data/skill_seeds/clinical-decision-support of ynulihao/AgentSkillOS.

Open the folder on GitHubat commit c3cfae1

Used in 12 other repositories

We found 14 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 12 other GitHub owners. This page covers the copy in ynulihao/AgentSkillOS, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Clinical Decision Support next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Clinical Decision Support compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Clinical Decision Support this skillynulihao/AgentSkillOS61812 repos~6.5kAutomated safety check: NotesNone
Research Proposalluwill/research-skills860—~4.5kAutomated safety check: NotesNone
Treatment Plansaipoch/medical-research-skills1.9k—~2kAutomated safety check: PassMIT
Academic Paper Writing PipelineImbad0202/academic-research-skills51k—~16kAutomated safety check: PassCustom licence
Econ Writehanlulong/econ-writing-skill6512 repos~14kAutomated safety check: PassMIT
NSFC Grant Rationale Writerhuangwb8/ChineseResearchLaTeX2.9k—~945Automated safety check: PassMIT

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Works with

Categories

Questions about Clinical Decision Support

What does Clinical Decision Support do?

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and…. Clinical Decision Support is an agent skill from ynulihao/AgentSkillOS. Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms).

When should I use Clinical Decision Support?

Clinical Decision Support fits situations like: tasks that involve Clinical and healthcare research.

How do I install Clinical Decision Support in Claude Code?

Run `npx skills add ynulihao/AgentSkillOS --skill clinical-decision-support -a claude-code`. Or copy the skill folder (data/skill_seeds/clinical-decision-support in ynulihao/AgentSkillOS) into .claude/skills/clinical-decision-support in your project. Claude Code loads it when a task matches its description.

How do I install Clinical Decision Support in Codex?

Run `npx skills add ynulihao/AgentSkillOS --skill clinical-decision-support -a codex`. Or copy the skill folder (data/skill_seeds/clinical-decision-support in ynulihao/AgentSkillOS) into .agents/skills/clinical-decision-support in your project. Codex loads it when a task matches its description.

Can I use Clinical Decision Support in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add ynulihao/AgentSkillOS --skill clinical-decision-support -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/clinical-decision-support, .gemini/skills/clinical-decision-support, .github/skills/clinical-decision-support and .opencode/skills/clinical-decision-support in your project.

What does Clinical Decision Support need to run?

Going by SKILL.md and its folder, Clinical Decision Support needs the command-line tools its instructions call (python). Our summary lists: Python 3. Its frontmatter pre-approves these tools: Read, Write, Edit, Bash.

Does Clinical Decision Support access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Clinical Decision Support safe to install?

Our automated static check of SKILL.md found notes only (pre-approves every shell command (allowed-tools: bash)), nothing it rates as a warning. It is not a guarantee. Review the folder before installing.

What licence does Clinical Decision Support use?

No licence was found for Clinical Decision Support or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Clinical Decision Support use?

About 6.5k tokens (SKILL.md is roughly 26k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Clinical Decision Support?

Skills that share tags, products or a category with Clinical Decision Support: Research Proposal (luwill/research-skills, 860 stars), Treatment Plans (aipoch/medical-research-skills, 1.9k stars), Academic Paper Writing Pipeline (Imbad0202/academic-research-skills, 51k stars) and Econ Write (hanlulong/econ-writing-skill, 651 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Clinical Decision Support?

ynulihao (a GitHub user) maintains it in ynulihao/AgentSkillOS, which has 618 GitHub stars. The repository holds 26 skills in this directory. The repository was last updated on March 7, 2026.

Source: ynulihao/AgentSkillOS on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.