Clinical Trials Database
google-deepmind/science-skills
Query ClinicalTrials.gov via APIv2. An agent skill from google-deepmind/science-skills.
FHIR RESTful search specification expert with access to the official HL7 search specification text and the formal SearchParameter registry.
$ npx skills add aehrc/pathling --skill fhir-search-spec -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install aehrc/pathling fhir-search-spec --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/aehrc/pathling.git skills-src && mkdir -p .claude/skills && cp -r skills-src/.claude/skills/fhir-search-spec .claude/skills/fhir-search-spec && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "fhir-search-spec" agent skill from https://github.com/aehrc/pathling/tree/main/.claude/skills/fhir-search-spec into .claude/skills/fhir-search-spec/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "fhir-search-spec", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/aehrc/pathling/tree/main/.claude/skills/fhir-search-specType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add aehrc/pathling --skill fhir-search-spec -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install aehrc/pathling fhir-search-spec --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/aehrc/pathling.git skills-src && mkdir -p .agents/skills && cp -r skills-src/.claude/skills/fhir-search-spec .agents/skills/fhir-search-spec && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "fhir-search-spec" agent skill from https://github.com/aehrc/pathling/tree/main/.claude/skills/fhir-search-spec into .agents/skills/fhir-search-spec/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "fhir-search-spec", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add aehrc/pathling --skill fhir-search-spec -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install aehrc/pathling fhir-search-spec --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/aehrc/pathling.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/.claude/skills/fhir-search-spec .cursor/skills/fhir-search-spec && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "fhir-search-spec" agent skill from https://github.com/aehrc/pathling/tree/main/.claude/skills/fhir-search-spec into .cursor/skills/fhir-search-spec/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "fhir-search-spec", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/aehrc/pathling.git --path .claude/skills/fhir-search-spec--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add aehrc/pathling --skill fhir-search-spec -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install aehrc/pathling fhir-search-spec --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/aehrc/pathling.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/.claude/skills/fhir-search-spec .gemini/skills/fhir-search-spec && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "fhir-search-spec" agent skill from https://github.com/aehrc/pathling/tree/main/.claude/skills/fhir-search-spec into .gemini/skills/fhir-search-spec/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "fhir-search-spec", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install aehrc/pathling fhir-search-specInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add aehrc/pathling --skill fhir-search-spec -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/aehrc/pathling.git skills-src && mkdir -p .github/skills && cp -r skills-src/.claude/skills/fhir-search-spec .github/skills/fhir-search-spec && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "fhir-search-spec" agent skill from https://github.com/aehrc/pathling/tree/main/.claude/skills/fhir-search-spec into .github/skills/fhir-search-spec/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "fhir-search-spec", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add aehrc/pathling --skill fhir-search-spec -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install aehrc/pathling fhir-search-spec --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/aehrc/pathling.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/.claude/skills/fhir-search-spec .opencode/skills/fhir-search-spec && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "fhir-search-spec" agent skill from https://github.com/aehrc/pathling/tree/main/.claude/skills/fhir-search-spec into .opencode/skills/fhir-search-spec/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "fhir-search-spec", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
fhir-search-specFHIR RESTful search specification expert with access to the official HL7 search specification text and the formal SearchParameter registry.
Fhir Search Spec is an agent skill from aehrc/pathling. FHIR RESTful search specification expert with access to the official HL7 search specification text and the formal SearchParameter registry. Use this skill whenever the user needs to look up, clarify, or understand FHIR search behaviour — search parameter types (string, token, reference, date, quantity, composite, etc.), search prefixes (eq, ne, gt, lt, ge, le, sa, eb, ap), search modifiers (:exact, :contains, :missing, :text, :above, :below, :not, etc.), chaining, reverse chaining (has), includes (include…
Its SKILL.md is about 650 tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files, including reference files (for example `references/FHIR_search.md` and `references/search-parameters.json`).
It sits in Research & Science, covering Clinical and healthcare research. The repository describes itself as: Tools that make it easier to use FHIR and clinical terminology within data analytics, built on Apache Spark. The licence is Apache-2.0.
2 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 56a3b4a. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
jqFrom the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Fhir Search Spec loads about 649 tokens when it runs, and up to ~573k if it reads all its reference files. Until then it costs about 210 tokens; SKILL.md has 172 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from aehrc/pathling at commit 56a3b4a, republished under its Apache-2.0 licence (© aehrc). 172 words, ~649 tokens.
.claude/skills/fhir-search-spec/SKILL.md (or your agent's skills folder). This skill also uses 2 other files; get the full folder from GitHub.You are a specification expert for FHIR RESTful search. Your job is to give precise, authoritative answers grounded in the local specification and registry files.
references/FHIR_search.md (very large). The normative HL7
FHIR search specification: search parameter types, prefixes, modifiers, chaining,
_include/_revinclude, composite parameters.references/search-parameters.json. A FHIR Bundle containing
every standard SearchParameter definition. Use it to look up a parameter's code, base
resource type(s), type (string, token, reference, etc.), and FHIRPath expression.FHIR_search.md is too large to load entirely — always use targeted search:
references/FHIR_search.md.For the registry, query it with jq rather than reading the whole file. A shell command resolves
paths against the working directory, not this skill's directory, so give the full path from the
repository root:
REGISTRY=.claude/skills/fhir-search-spec/references/search-parameters.json
# Find all string search parameters for Patient
jq '.entry[].resource | select(.base[]? == "Patient" and .type == "string") | {code, expression, description}' "$REGISTRY"
# Find a specific search parameter by code
jq '.entry[].resource | select(.code == "name") | {code, base, type, expression}' "$REGISTRY"© aehrc, Apache-2.0. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 2 other files (references) in .claude/skills/fhir-search-spec of aehrc/pathling.
Open the folder on GitHubat commit 56a3b4a
Fhir Search Spec next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Fhir Search Spec this skillaehrc/pathling | 137 | — | ~649 | Automated safety check: Pass | Apache-2.0 | |
| Clinical Trials Databasegoogle-deepmind/science-skills | 3.2k | 2 repos | ~3.2k | Automated safety check: Pass | Apache-2.0 | |
| CHARLS Paper Reproduction Guidexjtulyc/MedgeClaw | 617 | 1 repos | ~1.8k | Automated safety check: Pass | None | |
| Biomedical Analysis Dispatchxjtulyc/MedgeClaw | 617 | 1 repos | ~2k | Automated safety check: Pass | None | |
| Research Paperluwill/research-skills | 862 | — | ~1.9k | Automated safety check: Pass | None | |
| Research Proposalluwill/research-skills | 862 | — | ~4.5k | Automated safety check: Notes | None |
google-deepmind/science-skills
Query ClinicalTrials.gov via APIv2. An agent skill from google-deepmind/science-skills.
xjtulyc/MedgeClaw
Guides an agent through reproducing papers built on the CHARLS health and retirement survey, from variable mapping to cognition, depression and isolation scores.
xjtulyc/MedgeClaw
Routes bioinformatics, drug discovery, clinical and multi-omics tasks from a chat interface to Claude Code sessions running K-Dense scientific skills, with a live dashboard per task.
luwill/research-skills
A skill your agent uses when the user asks to write or draft an ORIGINAL RESEARCH ARTICLE — IMRaD paper, conference paper, short/workshop paper, 研究论文/期刊论文/会议论文 — reporting their own completed…
luwill/research-skills
A skill your agent uses when the user asks to write or draft a PhD / doctoral research proposal, research plan, 研究计划书, or 开题报告 — a forward-looking plan of background, gap, research questions…
LeonChaoX/qinyan-academic-skills
Write comprehensive literature reviews for medical imaging AI research.
aehrc/pathling
Expert guidance for using the Databricks CLI to manage Databricks workspaces, clusters, jobs, pipelines, Unity Catalog, SQL warehouses, serving endpoints, secrets, bundles, and all other Databricks…
aehrc/pathling
Expert guidance for implementing FHIR RESTful API servers and clients following the HL7 FHIR specification.
aehrc/pathling
Expert guidance for implementing FHIR Bulk Data Access (Flat FHIR) following the HL7 specification.
aehrc/pathling
Design and generate comprehensive FHIRPath test suites using input domain partitioning and Pathling's DSL test framework.
aehrc/pathling
Expert guidance for implementing FHIR servers using HAPI FHIR Plain Server framework.
aehrc/pathling
Expert guidance for writing end-to-end tests with Playwright Test framework.
Categories
FHIR RESTful search specification expert with access to the official HL7 search specification text and the formal SearchParameter registry. Fhir Search Spec is an agent skill from aehrc/pathling. FHIR RESTful search specification expert with access to the official HL7 search specification text and the formal SearchParameter registry.
Fhir Search Spec fits situations like: the user needs to look up; understand FHIR search behaviour — search parameter types (string; search prefixes (eq; search modifiers (:exact.
Run `npx skills add aehrc/pathling --skill fhir-search-spec -a claude-code`. Or copy the skill folder (.claude/skills/fhir-search-spec in aehrc/pathling) into .claude/skills/fhir-search-spec in your project. Claude Code loads it when a task matches its description.
Run `npx skills add aehrc/pathling --skill fhir-search-spec -a codex`. Or copy the skill folder (.claude/skills/fhir-search-spec in aehrc/pathling) into .agents/skills/fhir-search-spec in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add aehrc/pathling --skill fhir-search-spec -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/fhir-search-spec, .gemini/skills/fhir-search-spec, .github/skills/fhir-search-spec and .opencode/skills/fhir-search-spec in your project.
Going by SKILL.md and its folder, Fhir Search Spec needs the command-line tools its instructions call (jq).
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Fhir Search Spec is published under the Apache-2.0 licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 649 tokens (SKILL.md is roughly 2.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 572k tokens, read only when the agent opens those files.
Skills that share tags, products or a category with Fhir Search Spec: Clinical Trials Database (google-deepmind/science-skills, 3.2k stars), CHARLS Paper Reproduction Guide (xjtulyc/MedgeClaw, 617 stars), Biomedical Analysis Dispatch (xjtulyc/MedgeClaw, 617 stars) and Research Paper (luwill/research-skills, 862 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
aehrc (a GitHub organization) maintains it in aehrc/pathling, which has 137 GitHub stars. The repository holds 25 skills in this directory. The repository was last updated on October 8, 2026.
Source: aehrc/pathling on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.