AlphaFold

Retrieve and analyze AlphaFold predicted structures for a protein.

google-deepmind/science-skills

Validate protein designs using AlphaFold2 structure prediction.

adaptyvbio/protein-design-skills

Design and run computational protein and ligand workflows on a GPU: binder and enzyme design, de novo backbone generation, inverse folding and sequence redesign, structure prediction, protein-ligand…

locbp-uzh/biopipelines

Structure prediction using Chai-1, a foundation model for molecular structure.

adaptyvbio/protein-design-skills

Query public biology databases and APIs including UniProt, RCSB PDB, AlphaFold DB, ClinVar, dbSNP, gnomAD, Ensembl, GEO, InterPro, KEGG, OpenTargets, Reactome, and STRING.

DrugClaw/DrugClaw

CLI/Python toolkit for rapid bioinformatics queries. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

Generate protein backbones using RFdiffusion, a diffusion-based generative model for de novo protein structure generation.

adaptyvbio/protein-design-skills

Access AlphaFold's 200M+ AI-predicted protein structures. An agent skill from davila7/claude-code-templates.

davila7/claude-code-templates

Visualize, analyze, and render protein and molecular structures using PyMOL.

google-deepmind/science-skills

Manage academic citations across BibTeX, APA, MLA, and Chicago formats

wentorai/research-plugins

Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API.

google-deepmind/science-skills

Structure prediction using Boltz-1/Boltz-2, an open biomolecular structure predictor.

adaptyvbio/protein-design-skills

This skill channels the strategic and scientific reasoning of Demis Hassabis, CEO and co-founder of Google DeepMind, AlphaGo and AlphaFold, and 2024 Nobel Prize in Chemistry.

K-Dense-AI/mimeo

Provides access to a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP server — no local GPUs required.

K-Dense-AI/scientific-agent-skills

Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai Discovery 2024, github.com/chaidiscovery/chai-lab).

JimLiu/science-skills

Binder design ranking using ipSAE (interprotein Score from Aligned Errors).

adaptyvbio/protein-design-skills

A skill your agent uses for AlphaFold 3 input preparation, prediction command planning, output interpretation, and Python API inspection.

VectorSpaceLab/AREX-Skill

Retrieves protein structure data from RCSB PDB, PDBe, and AlphaFold with protein disambiguation, quality assessment, and comprehensive structural profiles.

wu-yc/LabClaw

Access and analyze AlphaFold protein structure predictions. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills.

FreedomIntelligence/OpenClaw-Medical-Skills

Access over 200M protein structures from AlphaFold DB; use when you need to retrieve predicted 3D structures (PDB/mmCIF), confidence metrics (pLDDT/PAE), or protein metadata by UniProt accession.

aipoch/medical-research-skills

Unified CLI/Python interface for querying genomic, proteomic, structure, and expression data across 20+ bioinformatics databases; use when you need fast, scriptable retrieval by gene/protein IDs or…

aipoch/medical-research-skills

Predict B-cell and T-cell epitopes for vaccine antigen design and epitope mapping with BepiPred-3.0, DiscoTope-3.0, the IEDB tools, and EL-mode MHC presentation.

GPTomics/bioSkills

Retrieves and interprets AlphaFold Protein Structure Database (AFDB) models by UniProt accession, reading pLDDT and PAE confidence correctly.

GPTomics/bioSkills

Unified CLI/Python interface to 20+ genomic databases. An agent skill from jaechang-hits/SciAgent-Skills.

jaechang-hits/SciAgent-Skills

Judges whether a macromolecular model (or a region of it) is reliable enough to build on, using resolution, R-free, B-factors, MolProbity geometry, and predicted-model confidence with Bio.PDB.

GPTomics/bioSkills

Access AlphaFold DB's 200M+ predicted structures by UniProt ID.

jaechang-hits/SciAgent-Skills

AlphaFold2 / AlphaFold-Multimer structure prediction for validation and confidence scoring.

BioTender-max/awesome-bio-agent-skills

Look up EMDB cryo-EM density maps and fitted atomic models via the entry REST API + EBI Search WS.

jaechang-hits/SciAgent-Skills

Protein language models (ESM3, ESM C) for sequence generation, structure prediction, inverse folding, and embeddings.

jaechang-hits/SciAgent-Skills

Query UniProt REST API: search by gene/protein name, fetch FASTA, map IDs (Ensembl, PDB, RefSeq), access Swiss-Prot annotations.

jaechang-hits/SciAgent-Skills

Query AlphaFold protein structure predictions by UniProt accession

wentorai/research-plugins

Search the protein information from the input gene name and downloads the optimal PDB or AlphaFold structures.

InternScience/scp

Query RCSB PDB (200K+ structures) via the public REST + GraphQL APIs with plain requests (no SDK).

jaechang-hits/SciAgent-Skills

Build, validate, convert, and troubleshoot AlphaFold 3 input JSON files before prediction runs.

VectorSpaceLab/AREX-Skill

24 biomedical research skills. An agent skill from wentorai/research-plugins.

wentorai/research-plugins

A skill your agent uses when running AlphaFold2 predictions on custom protein sequences, validating designed sequences via self-consistency, predicting binder-target complexes, or interpreting AF2…

lamm-mit/scienceclaw

ToolUniverse workflow — Protein Structure Retrieval. An agent skill from lamm-mit/scienceclaw.

lamm-mit/scienceclaw