Skill collection
BioTender-max/awesome-bio-agent-skills agent skills
- skills
- 23
- GitHub stars
- 200
GitHub description: “A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.”
- Stars
- 200 (35 forks)
- Licence
- Unknown
- Last push
- Jul 2026
- Created
- May 2026
- ai-agent
- awesome
- awesome-list
- bioinformatics
- biomedical
- genomics
- llm
- protein-design
- single-cell
- skills
- agent-skills
- ai-agents
- claude
- claude-code
- claude-skills
- computational-biology
Install all skills
npx skills add BioTender-max/awesome-bio-agent-skillsAdd --skill <name> for a single skill and -a <agent> to choose the agent (see the agent guides).
Skills in BioTender-max/awesome-bio-agent-skills, ranked
Ranked by score. Sort bymost stars,trending,newest,recently updated
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Critically review, score, compare, and rank one or more AI scientist outputs for biology, bioinformatics, computational life science, or adjacent research tasks. | BioTender-max/ | 200 | — | ~2.4k | Automated safety check: Pass | Unknown | 3 mo ago |
| 2 | Web toolkit powered by Exa, tuned for scientific and technical content. | BioTender-max/ | 200 | — | ~1.2k | Automated safety check: Notes | MIT | 3 mo ago |
| 3 | Queries JGI Lakehouse (Dremio) for genomics metadata from GOLD, IMG, Mycocosm, Phytozome. | BioTender-max/ | 200 | — | ~3.7k | Automated safety check: Pass | Unknown | 3 mo ago |
| 4 | Operator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs. | BioTender-max/ | 200 | — | ~1.3k | Automated safety check: Pass | MIT | 3 mo ago |
| 5 | Assess paper and journal impact using OpenAlex citation counts, optional Altmetric data, and curated journal impact-factor references. | BioTender-max/ | 200 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6 | Search arXiv preprints through the official arXiv API and turn arXiv IDs into local Markdown summaries. | BioTender-max/ | 200 | — | ~2.9k | Automated safety check: Pass | Unknown | 3 mo ago |
| 7 | Search bioRxiv preprints through the official bioRxiv API and locally filter titles, abstracts, and authors for keyword queries. | BioTender-max/ | 200 | — | ~2.4k | Automated safety check: Pass | Unknown | 3 mo ago |
| 8 | Query the Crossref REST API for DOI validation, title search, citation metadata, and bibliography audits. | BioTender-max/ | 200 | — | ~1.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 9 | 9.Pyhealth Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, eICU, OMOP, SleepEDF, ChestXray14, EHRShot), defining tasks (mortality… | BioTender-max/ | 200 | — | ~1.8k | Automated safety check: Pass | Unknown | 3 mo ago |
| 10 | 10.Adaptyv How to use the Adaptyv Bio Foundry API and Python SDK for protein experiment design, submission, and results retrieval. | BioTender-max/ | 200 | — | ~1.9k | Automated safety check: Notes | Unknown | 3 mo ago |
| 11 | AlphaFold2 / AlphaFold-Multimer structure prediction for validation and confidence scoring. | BioTender-max/ | 200 | — | ~1.4k | Automated safety check: Pass | MIT | 3 mo ago |
| 12 | Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation. | BioTender-max/ | 200 | 1 repo | ~1.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 13 | Binder design tool selection and workflow routing guidance. An agent skill from BioTender-max/awesome-bio-agent-skills. | BioTender-max/ | 200 | — | ~1.4k | Automated safety check: Pass | MIT | 3 mo ago |
| 14 | Decision framework for manual marker-based, automated (CellTypist), and reference-based (popV) cell type annotation in scRNA-seq. | BioTender-max/ | 200 | 1 repo | ~7.7k | Automated safety check: Pass | CC-BY-4.0 | 3 mo ago |
| 15 | Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation. | BioTender-max/ | 200 | 1 repo | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 16 | End-to-end protein design pipeline guide across preparation, generation, validation, and filtering. | BioTender-max/ | 200 | — | ~1.4k | Automated safety check: Pass | MIT | 3 mo ago |
| 17 | Run a multi-agent scientific manuscript review with parallel specialist reviewers, disagreement checks, and an editor meta-review. | BioTender-max/ | 200 | — | ~2.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 18 | 18.Modal Cloud computing platform for running Python on GPUs and serverless infrastructure. | BioTender-max/ | 200 | — | ~3.1k | Automated safety check: Notes | Apache-2.0 | 3 mo ago |
| 19 | Protein design quality control, filtering thresholds, and ranking guidance. | BioTender-max/ | 200 | — | ~2.6k | Automated safety check: Pass | MIT | 3 mo ago |
| 20 | Proteina-Complexa flow-based protein backbone generation with fold-conditioned sampling guidance. | BioTender-max/ | 200 | — | ~1.4k | Automated safety check: Notes | MIT | 3 mo ago |
| 21 | Guide for building Graph Neural Networks with PyTorch Geometric (PyG). | BioTender-max/ | 200 | — | ~4.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 22 | Chai-1 structure prediction for protein complexes and design validation. | BioTender-max/ | 200 | — | ~1.7k | Automated safety check: Pass | MIT | 3 mo ago |
| 23 | 23.Notebooks Author, execute, and deliver reproducible analysis notebooks in marimo (default) or Jupyter, with all cells run end-to-end and figures embedded. | BioTender-max/ | 200 | — | ~2.9k | Automated safety check: Pass | Unknown | 3 mo ago |
Questions, answered from the data.
What is the best skill in BioTender-max/awesome-bio-agent-skills?
AI Scientist Evaluator from BioTender-max/awesome-bio-agent-skills ranks first of the 23 skills in BioTender-max/awesome-bio-agent-skills listed here, with the highest score: its repository has 200 GitHub stars, its SKILL.md loads about 2.4k tokens and it passes the automated safety check with no findings. Next come Exa Search and Jgi Lakehouse.
Are the skills in BioTender-max/awesome-bio-agent-skills official?
None yet. All 23 skills in BioTender-max/awesome-bio-agent-skills listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How do I install all skills from BioTender-max/awesome-bio-agent-skills?
Run npx skills add BioTender-max/awesome-bio-agent-skills in your project: the open-source skills CLI installs the repository's skills into your coding agent's skills folder. To install a single skill, open its page here for the exact command.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.